View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_high_4 (Length: 406)
Name: NF17589_high_4
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_high_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 46 - 406
Target Start/End: Original strand, 21012910 - 21013269
Alignment:
| Q |
46 |
agtggaaattgcaaaatggcctcaaaatactactgaattaagataggtaaatcacaattaatcaacagctaaatctgtagagacagtaatgcacccccca |
145 |
Q |
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| T |
21012910 |
agtggaaattgcaaaatggcctcaaaatacgactgaattaagatagctaaatcacaattaatcaacagctaaatctgtagagacactgatgcacccccca |
21013009 |
T |
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| Q |
146 |
taactactttaagagtaggcatcttctctatgttttttcaacaaagtcccagaaattattttccattttgttggttatgtaatcaattaacatgaaaaaa |
245 |
Q |
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| T |
21013010 |
taactactttaagagtaggcatcttctctatgttttttcaacaaagtcccagaaattattttccattttgttggttatgtaatcaattaacatgaaaaaa |
21013109 |
T |
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| Q |
246 |
tattgaaacattgtcaacaccctgcgttattggtaccacaattcattaatgtaaggagataataatagcaaacaaattttactatactttgtaccaacat |
345 |
Q |
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| T |
21013110 |
gattgaaacattgtcaacaccctgcgttatt-gtaccacaattcattaatgtaaggagataataatagcaaacaaattttactatactttgtactaacat |
21013208 |
T |
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| Q |
346 |
taataaactatgtacgagagagactgtaattgaagaaaaacacagacacagattccaatgc |
406 |
Q |
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| T |
21013209 |
taataaactatgtacgagagagactgtaattgaagaaaaacacagacacagattccaatgc |
21013269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 57 - 391
Target Start/End: Original strand, 20961482 - 20961813
Alignment:
| Q |
57 |
caaaatggcctcaaaatactactgaattaagataggtaaatcacaattaatcaacagctaaatctgtagagacagtaatgcaccccccataactacttta |
156 |
Q |
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| T |
20961482 |
caaaatgaactcaaaatacgactcaattaagatagctaaatcacaattagtcaacaactaaatctgtagagacagtaatgcacccc-cataactacttta |
20961580 |
T |
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| Q |
157 |
agagtaggcatcttctctatgttttttcaacaaagtcccagaaattattttccattttgttggttatgtaatcaattaacatgaaaaaatattgaaacat |
256 |
Q |
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| T |
20961581 |
agagtaggcatcttctctatgttttttcaacaaagtcccagaaattattttccattttggtagttatgtaatcaattaacatgagaaaaaattgaaactt |
20961680 |
T |
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| Q |
257 |
tgtcaacacc---ctgcgttattggtaccacaattcattaatgtaaggagataataatagcaaacaaattttactatactttgtacca--acatt-aata |
350 |
Q |
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| T |
20961681 |
tgtcaacaccctgctgcattattggtaccacaattcattaatgtaaggagataataatagcaaacaaattttacta------gtaccattaaattcaata |
20961774 |
T |
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| Q |
351 |
aactatgtacgagagagactgtaattgaagaaaaacacaga |
391 |
Q |
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| T |
20961775 |
aactatgtac--gagagactgtaattgaagaaaaacacaga |
20961813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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