View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_high_5 (Length: 389)
Name: NF17589_high_5
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 43113574 - 43113671
Alignment:
| Q |
241 |
actcatgataatcaaaatgaggataaaaagttatctcctttcttactgagattttcaggacactactaacaggaaacgaacatcagaaaaatagcaac |
338 |
Q |
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| T |
43113574 |
actcatgataatcaaaatgaggataaaaagttatctcctttcttactgagattttcaggacactactaacaggaaatgaacatcagaaaaatagcaac |
43113671 |
T |
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Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 43113434 - 43113511
Alignment:
| Q |
101 |
tatgataaataacagtaatgtagtaaacaaacatattccagaagttaagcataaaatagataccctttattctattcc |
178 |
Q |
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| T |
43113434 |
tatgataaataacagtaatgtagtaaacaaacatattccagaagttaagcataaaatagataccctttattctattcc |
43113511 |
T |
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