View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_11 (Length: 353)
Name: NF17589_low_11
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_11 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 47309 - 47629
Alignment:
| Q |
14 |
ataatacttcgataggtgtaagtgtcagcctttgaaacattaacccatgatattctagtggaatagaattattgaaatcattttaccattacaattatgg |
113 |
Q |
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| T |
47309 |
ataatactttgataggtgtaagtgtcagcctttgaaacattaacccatgatattctagtggaatagaattattgaaatcattttaccattacaattatgg |
47408 |
T |
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| Q |
114 |
cctaattcgatctgattttgtagttaaagtctaagtgnnnnnnnnnnnnggttggatttcatgctcttttccaattatcattgaatgaataaagtttcgg |
213 |
Q |
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| T |
47409 |
cctaattcgatctgattttgtggttaaaatctaagtgtttttcttttttggttggatttcatgctcttttccaattatcattgaatgaataaagtttcgg |
47508 |
T |
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| Q |
214 |
tgggttaatgaacaatttttgggtgtccacatactatagataatattttttggtaatatggatgataactaacaacttacatagacagcatgcacgcata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47509 |
tgggttaatgaacaatttttgggtgtccacatactatagataatattttttgataatatggatgataactaacaacttacatagacagcatgcacacata |
47608 |
T |
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| Q |
314 |
tgcagaagaagctaaggcaat |
334 |
Q |
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| T |
47609 |
tgcagaagaagctaaggcaat |
47629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 218 - 334
Target Start/End: Original strand, 12325335 - 12325451
Alignment:
| Q |
218 |
ttaatgaacaatttttgggtgtccacatactatagataatattttttggtaatatggatgataactaacaacttacatagacagcatgcacgcatatgca |
317 |
Q |
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| T |
12325335 |
ttaatgaacaatttttgggtgtccacatactatagataatattttttggtaatatggatgataactaacaacttacatagacagcatgcacacatatgca |
12325434 |
T |
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| Q |
318 |
gaagaagctaaggcaat |
334 |
Q |
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|||| |||||||||||| |
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| T |
12325435 |
gaagcagctaaggcaat |
12325451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 221 - 330
Target Start/End: Original strand, 35991536 - 35991646
Alignment:
| Q |
221 |
atgaacaatttttgggtgtccacat-actatagataatattttttggtaatatggatgataactaacaacttacatagaca-gcatgcacgcatatgcag |
318 |
Q |
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||||||||||| |||||||||| || |||| ||||||||||||||| || | ||| |||||||| |||||||| ||||| |||||||| |||||||| |
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| T |
35991536 |
atgaacaatttctgggtgtccatatgtgtatatataatattttttggtgatgt-gattataactaaaaacttacacagacatgcatgcacacatatgcat |
35991634 |
T |
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| Q |
319 |
aagaagctaagg |
330 |
Q |
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|| |||| |||| |
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| T |
35991635 |
aataagccaagg |
35991646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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