View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17589_low_12 (Length: 323)

Name: NF17589_low_12
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17589_low_12
NF17589_low_12
[»] chr5 (1 HSPs)
chr5 (10-304)||(30073162-30073456)
[»] chr4 (2 HSPs)
chr4 (10-79)||(14119292-14119361)
chr4 (10-76)||(14089429-14089495)
[»] chr2 (5 HSPs)
chr2 (10-76)||(25896637-25896703)
chr2 (12-76)||(27487560-27487624)
chr2 (30-64)||(27877246-27877280)
chr2 (35-63)||(27179662-27179690)
chr2 (35-63)||(27829204-27829232)
[»] chr6 (1 HSPs)
chr6 (10-73)||(18562212-18562275)
[»] chr3 (2 HSPs)
chr3 (10-77)||(26882556-26882622)
chr3 (30-64)||(11533368-11533402)
[»] chr1 (1 HSPs)
chr1 (10-77)||(22096049-22096116)
[»] chr8 (1 HSPs)
chr8 (12-76)||(22739938-22740002)
[»] chr7 (3 HSPs)
chr7 (24-76)||(20935119-20935171)
chr7 (10-76)||(6485423-6485489)
chr7 (10-64)||(28488956-28489010)


Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 30073456 - 30073162
Alignment:
Q  10 acatcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacactataagcaacttcacttatgtcacatcaagaatgatcaaaattcttc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30073456 acatcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacactataagcaacttcacttatgtcacatcaagaatgatcaaaattcttc 30073357  T
Q  110 aaaatccagaatcaaaattagatcagaatgaagattagattgtacttcaaaatgcatatcaaatatataagcaatgcagttcaacaacacatcatattga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30073356 aaaatccagaatcaaaattagatcagaatgaagattagattgtactttaaaatgcatatcaaatatataagcaatgcagttcaacaacacatcatattga 30073257  T
Q  210 agttctaaagatcaaacttcaaattaagaaatttaaaaaacaccaaaagaatgatgaagggaaacaacttcaaaagtgtgttagaatatgagatt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30073256 agttctaaagatcaaacttcaaattaagaaatttaaaaaacaccaaaagaatgatgaagggaaacaacttcaaaagtgtgttagaatatgagatt 30073162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 14119292 - 14119361
Alignment:
Q  10 acatcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacactataagcaacttcactt 79  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  14119292 acatcatcaaaagaatctagctaataaacatcatcaaaacacaaacctaacactatgagcaacttcactt 14119361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 14089495 - 14089429
Alignment:
Q  10 acatcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacactataagcaacttca 76  Q
    |||||||||||| || ||||||||| |||||||||||||||||||| |   |||| |||||||||||    
T  14089495 acatcatcaaataaacctagctaatgaacatcatcaaaacacaaatttgtaactaaaagcaacttca 14089429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 25896703 - 25896637
Alignment:
Q  10 acatcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacactataagcaacttca 76  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||  ||||||||||    
T  25896703 acatcatcaaaagaatctagctagtaaacatcatcaaaacacaaacctaacactaggagcaacttca 25896637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 27487624 - 27487560
Alignment:
Q  12 atcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacactataagcaacttca 76  Q
    ||||||||| |||| || ||||||||||||||||||||||||  |||||||||||||||||||||    
T  27487624 atcatcaaaggaatttacctaataaacatcatcaaaacacaagcctaacactataagcaacttca 27487560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 27877280 - 27877246
Alignment:
Q  30 ctaataaacatcatcaaaacacaaatctaacacta 64  Q
    ||||||||||||||||||||||||| |||||||||    
T  27877280 ctaataaacatcatcaaaacacaaacctaacacta 27877246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 27179690 - 27179662
Alignment:
Q  35 aaacatcatcaaaacacaaatctaacact 63  Q
    |||||||||||||||||||||||||||||    
T  27179690 aaacatcatcaaaacacaaatctaacact 27179662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Complemental strand, 27829232 - 27829204
Alignment:
Q  35 aaacatcatcaaaacacaaatctaacact 63  Q
    |||||||||||||||||||||||||||||    
T  27829232 aaacatcatcaaaacacaaatctaacact 27829204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 18562212 - 18562275
Alignment:
Q  10 acatcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacactataagcaact 73  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||| |||| | || ||||||||    
T  18562212 acatcgtcaaaagaatctagctagtaaacatcatcaaaacacaaacctaatattagaagcaact 18562275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 26882622 - 26882556
Alignment:
Q  10 acatcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacactataagcaacttcac 77  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||| | ||||||| | ||||||||||    
T  26882622 acatcatcaagagaatctagcaaataaacatcatcaaaacacaaa-ccaacactagatgcaacttcac 26882556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 11533402 - 11533368
Alignment:
Q  30 ctaataaacatcatcaaaacacaaatctaacacta 64  Q
    ||||||||||||||||||||||||| |||||||||    
T  11533402 ctaataaacatcatcaaaacacaaacctaacacta 11533368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 22096049 - 22096116
Alignment:
Q  10 acatcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacactataagcaacttcac 77  Q
    |||||||||||  |||||||||||||||||||||||||| ||||| | || |||  ||||||||||||    
T  22096049 acatcatcaaagaaatctagctaataaacatcatcaaaagacaaacccaaaacttaaagcaacttcac 22096116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 22740002 - 22739938
Alignment:
Q  12 atcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacactataagcaacttca 76  Q
    |||||||||| || ||||||||| ||||||||||||||||||| |||  |||| || ||||||||    
T  22740002 atcatcaaataaacctagctaatgaacatcatcaaaacacaaacctataactaaaaacaacttca 22739938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 20935171 - 20935119
Alignment:
Q  24 atctagctaataaacatcatcaaaacacaaatctaacactataagcaacttca 76  Q
    |||||||||| ||||| |||||||| ||||| |||||||||||||||| ||||    
T  20935171 atctagctaaaaaacaacatcaaaaaacaaacctaacactataagcaatttca 20935119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 6485489 - 6485423
Alignment:
Q  10 acatcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacactataagcaacttca 76  Q
    |||||||||||| || ||||||||| || |||||||||||||||| |||  |||| || ||||||||    
T  6485489 acatcatcaaataaacctagctaatgaaaatcatcaaaacacaaacctataactaaaaacaacttca 6485423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 28489010 - 28488956
Alignment:
Q  10 acatcatcaaatgaatctagctaataaacatcatcaaaacacaaatctaacacta 64  Q
    |||| |||||| ||| ||||||||||||| |||| |||||||||| |||||||||    
T  28489010 acattatcaaaagaaactagctaataaacttcattaaaacacaaacctaacacta 28488956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University