View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_13 (Length: 316)
Name: NF17589_low_13
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 28091439 - 28091138
Alignment:
| Q |
15 |
ttttgttcatggatgtgtgttaagactcgactgctttcaatggttgaagactacaacaccttaaggcaggagaaagagaatgaaaggcaaaagcagaagg |
114 |
Q |
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| T |
28091439 |
ttttgttcatggatgtgtgttaagactcgactgctttcaatggttgaagactacaacaccttaaggcaggagaaagagaatgaaaggcaaaagcagaagg |
28091340 |
T |
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| Q |
115 |
tatgcaactaaatgtgtagtagatggtctagaattcccttcttgacatttatttgttccaattcattgtctacaattcaattattttgacttgtttttgt |
214 |
Q |
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| T |
28091339 |
tatgcaactaaatgtgtagtagatggtctagaattcccttcttgacatttatttgttccaattcattgtctacaattcaattagtttgacttgtttttgt |
28091240 |
T |
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| Q |
215 |
ataaattttaggatgaaaagagactaaagggacaactgttggcagagcatgaaacactttttggaccaaaacccagcccaagtagaagtgggataaaggc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
28091239 |
ataaattttaggatgaaaagagactaaagggacaactgttggcagagcatgaaacactttttggatcaaaacccagcccaagtaaaagtgggataaaggc |
28091140 |
T |
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| Q |
315 |
tc |
316 |
Q |
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| T |
28091139 |
tc |
28091138 |
T |
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