View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_14 (Length: 314)
Name: NF17589_low_14
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 301
Target Start/End: Complemental strand, 4857659 - 4857371
Alignment:
| Q |
25 |
aaaaagcaagacaatattatgagtattgtgcaaataaannnnnnnacatataaaagaaatctatacacttattgtgtggaaagacaaataaatataacat |
124 |
Q |
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| T |
4857659 |
aaaaagcaagacaatattatgagtattgtgcaaacaaaattttttacatataaaagaaatctatacaattattgtgtggaaagacaaataaatataacat |
4857560 |
T |
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| Q |
125 |
ttataagttatttcag------------aggtagggtctctatggagttggtgaactttcgttctcgtcctcgtgaggaaagccttctcgccaacgaggg |
212 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4857559 |
ctataagttattttagtaaactgtttagaggtagggtctctatggagttggtgaactttcgttctcgtcctcgtgaggaaagccttctcgccaacgaggg |
4857460 |
T |
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| Q |
213 |
cttaaatggggcagtttctacggagatccccacttacatgtacaaattgacatacctagataaatgtcaaacattccaacttggatatt |
301 |
Q |
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|| |||||||||| |||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
4857459 |
ctcaaatggggcaatttccacggagatccccacttacacgtacaaattgacatccctagataaatgtcaaacatttcaacttggatatt |
4857371 |
T |
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