View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_16 (Length: 293)
Name: NF17589_low_16
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_16 |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 14 - 262
Target Start/End: Complemental strand, 36933214 - 36932966
Alignment:
| Q |
14 |
agagagtgatacatgtgaaaacaccacaaacttcaggcttaatgtttatcctcatggttggagggtgcaccgtatatcaagcatttatcattcactcttt |
113 |
Q |
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| T |
36933214 |
agagattgatacatgtgaaaacaccacaaacttcaggcttaatgtttatcctcatggttggagggtgcaccgtatatcaagcatttatcatccactcttt |
36933115 |
T |
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| Q |
114 |
tttaactgctcttctttgtcgccttcttctctgaaatggttggaggcaccgtatatcatattttttgaaatgtttaaaaccagcgtggcttaactcatgc |
213 |
Q |
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| T |
36933114 |
tttaactgctcttctttgtcgtcttcttctctggaatggttagaggcaccgtatatcatattttttgaaatgtttaaaaccagcgtgacttaattcacgc |
36933015 |
T |
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| Q |
214 |
ggtattacttaagtcacgcataaaatacaatatgcattagttaagtcac |
262 |
Q |
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| T |
36933014 |
agcgctatttaaattacgcataaaatacaatgtgcgttagttaagtcac |
36932966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 36073951 - 36073759
Alignment:
| Q |
14 |
agagagtgatacatgtgaaaacaccacaaacttcaggcttaatgtttatcctcatggttggagggtgcaccgtatatcaagcatttatcattcactcttt |
113 |
Q |
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| T |
36073951 |
agagattgatacatgtgaaaacaccacaaacttcaggcttaatgtttatcctcatggttggagagtgcaccgtatatcaagcatttatcatccactc-tt |
36073853 |
T |
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| Q |
114 |
tttaactgctcttctttgtcgccttcttctctgaaatggttggaggcaccgtatatcatattttttgaaatgtttaaaaccagcgtggcttaac |
207 |
Q |
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| T |
36073852 |
tttaactgctcttctttgtcgtcttcttctctggaatggttggaagcaccgtatatcatattttttgaaatgtttaaaatcagcgtgacttaac |
36073759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 43837902 - 43837820
Alignment:
| Q |
29 |
tgaaaacaccacaaacttcaggcttaatgtttatcctcatggttggagggtgcaccgtatatcaagcatttatcattcactctttt |
114 |
Q |
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| T |
43837902 |
tgaaaacaccacaaacttcaggcttaatgtttgtcctcatggttggag---gcaccgtatatcaaacatttatcatccactctttt |
43837820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 262
Target Start/End: Complemental strand, 14613664 - 14613622
Alignment:
| Q |
220 |
acttaagtcacgcataaaatacaatatgcattagttaagtcac |
262 |
Q |
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| T |
14613664 |
acttaagtcacgcataaaatacaacgtgcgttagttaagtcac |
14613622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 34726 - 34785
Alignment:
| Q |
203 |
ttaactcatgcggtattacttaagtcacgcataaaatacaatatgcattagttaagtcac |
262 |
Q |
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| T |
34726 |
ttaactcatgccgcactacttaagtcacgcataaattacaacgtgcgttagttaagtcac |
34785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 9958177 - 9958219
Alignment:
| Q |
220 |
acttaagtcacgcataaaatacaatatgcattagttaagtcac |
262 |
Q |
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| T |
9958177 |
acttaagtcacgcataaaatacaacgtgcgttagttaagtcac |
9958219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 45801929 - 45801970
Alignment:
| Q |
220 |
acttaagtcacgcataaaatacaatatgcattagttaagtca |
261 |
Q |
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| T |
45801929 |
acttaagtcacgcataaaatacaacgtgcgttagttaagtca |
45801970 |
T |
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