View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_17 (Length: 288)
Name: NF17589_low_17
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 23746290 - 23746537
Alignment:
| Q |
4 |
cgtgagacgtgtcacaaggcatattttcctataagcttcatctgtgaaacctgaacatgagtaatgctgtgaataaatccaatcccagggcatgacaact |
103 |
Q |
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| T |
23746290 |
cgtgagacgtgtcagaaggcatattttcctataagcttcatctgtgaaac-tgaacatgagtaatgctgtgaattaatccaatcccagggcatgacaact |
23746388 |
T |
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| Q |
104 |
ggaacataaatatgatgagttttagttcctgcctagacactgcatagagattcaaactctgaagggataggcatttctgcaacaactctttcaaccccac |
203 |
Q |
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| T |
23746389 |
ggaacataaatatgatgagttttagttcctacctagacactgcatagagattcaaactctgaagggataggcatttctgcaacaactccttcaaccccgc |
23746488 |
T |
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| Q |
204 |
atgagttaacttgacgcacctaggtgtgaaattatgttatatatgttag |
252 |
Q |
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| T |
23746489 |
atcagttaacttgacgcacctaggtgtgaaattatgttatatatgttag |
23746537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 23671889 - 23672105
Alignment:
| Q |
19 |
aaggcatattttcctataagcttcatctgtgaaacctgaacatgagtaatgctgtgaataaatccaatcccagggcatgacaactggaacataaatatga |
118 |
Q |
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| T |
23671889 |
aaggcatagtttcctgtaagcttcatctatgaaag-taaacaagagtgatgctgtgaattaatcccatccaagggccatacaactttgaaataagtatt- |
23671986 |
T |
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| Q |
119 |
tgagttttagttcctgcctagacactgcatagagattcaaactctgaagggataggcatttctgcaacaactctttcaaccccacatgagttaacttgac |
218 |
Q |
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| T |
23671987 |
tgagctgtagtgtctacctagacattgcatagagattcaaactctaaagggatggacatttctgcaacaactactttagctccacgttagttaacttgac |
23672086 |
T |
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| Q |
219 |
gcacctaggtgtgaaatta |
237 |
Q |
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| T |
23672087 |
gcatctagatgtgaaatta |
23672105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 23685384 - 23685557
Alignment:
| Q |
21 |
ggcatattttcctataagcttcatctgtgaaacctgaacatgagtaatgct-----gtgaataaatccaatcccagggcatgacaactggaacataaata |
115 |
Q |
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| T |
23685384 |
ggcatattttcctataagcttcatttgtgaaa-ctgaataagagtaatgctatatgattaattaatcaaatcttaaagcaagaaaacttgaacttcaata |
23685482 |
T |
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| Q |
116 |
tgatgagttttagttcctgcctagacactgcatagagattcaaactctgaagggataggcatttctgcaacaact |
190 |
Q |
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| T |
23685483 |
tgttgagttgcagtgcctacctagacactacatagagattctgattcggaagggatagacatttgtgcaacaact |
23685557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 19565161 - 19565117
Alignment:
| Q |
8 |
agacgtgtcacaaggcatattttcctataagcttcatctgtgaaa |
52 |
Q |
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| T |
19565161 |
agacgtgtcagaagacatattttgctttaagcttcatctgtgaaa |
19565117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 705455 - 705279
Alignment:
| Q |
12 |
gtgtcacaaggcatattttcctataagcttcatctgtgaaacctgaacatgagtaatg--ctgtg---aataaatccaatcccagggcatgacaactgga |
106 |
Q |
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| T |
705455 |
gtgtcaaaaggcatattttcctataagcttcaactgtgaaa-ctgaataagagtaatgttctatgattaattaatcaaatctgaaggcaagaaaacttga |
705357 |
T |
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| Q |
107 |
acataaatatgatgagttttagttcctgcctagacactgcatagagattcaaactctgaagggataggcatttctgcaacaact |
190 |
Q |
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| T |
705356 |
acttcaatatgttgagtttcagtgcct------acactgcatagagattctaattctgaagtgatagacatttgtgcaacaact |
705279 |
T |
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