View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_18 (Length: 278)
Name: NF17589_low_18
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 37486238 - 37486124
Alignment:
| Q |
5 |
atgtgatgagttagttgtattagataatttagaggcgagccatcatattctgaaaggatctagagagatgagtcattggtaagttgttagaatacacatg |
104 |
Q |
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| T |
37486238 |
atgtgatgagttagttgtattagataatttagaggcgagccatcatattctgaaaggatctagagagatgagtcattggtaagttgttagaatacacatg |
37486139 |
T |
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| Q |
105 |
ttataaataaatgat |
119 |
Q |
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| T |
37486138 |
ttataaataaatgat |
37486124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 37486065 - 37485925
Alignment:
| Q |
122 |
ttttagtgtagtttttattctcttagtatagtttctcttccatttatgaacaacccaaaagttgtttataacaacctcccacatctataaataggttaac |
221 |
Q |
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| T |
37486065 |
ttttaatgtagtttttattctcttagcatagtttctcttccatttatgaacaacccaaaagttgttcataaccacctcccacatctataaataggttaac |
37485966 |
T |
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| Q |
222 |
--atatgtacaattgtattcaagcatttgagaagtaatttt |
260 |
Q |
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| T |
37485965 |
atatatgtacaattgtattcaagcatttgagaagtaatttt |
37485925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 8355630 - 8355557
Alignment:
| Q |
122 |
ttttagtgtagtttttattctcttagtatagtttctcttccatttatgaacaacccaaaagttgtttataacaa |
195 |
Q |
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| T |
8355630 |
ttttagtgtagtttttattctcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
8355557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 8482665 - 8482718
Alignment:
| Q |
142 |
tcttagtatagtttctcttccatttatgaacaacccaaaagttgtttataacaa |
195 |
Q |
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| T |
8482665 |
tcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
8482718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 42022970 - 42023010
Alignment:
| Q |
155 |
tctcttccatttatgaacaacccaaaagttgtttataacaa |
195 |
Q |
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| T |
42022970 |
tctctttcatttatgaacaacccaaaagttgtccataacaa |
42023010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 5411369 - 5411434
Alignment:
| Q |
8 |
tgatgagttagttgtattagataatttagaggcgagccatcatattctgaaaggatctagagagat |
73 |
Q |
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| T |
5411369 |
tgatgagttggttgcattagatattttagaggcgagtcatcatgttctagaaggatctagagagat |
5411434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 36866296 - 36866343
Alignment:
| Q |
148 |
tatagtttctcttccatttatgaacaacccaaaagttgtttataacaa |
195 |
Q |
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| T |
36866296 |
tataatttctctttcatttatgaacaaccaaaaagttgttcataacaa |
36866343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 33798909 - 33798857
Alignment:
| Q |
204 |
atctataaataggttaacatatgtacaattgtattcaagcatttgagaagtaa |
256 |
Q |
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| T |
33798909 |
atctataaatagataagcatatgtgcaattgtattcaagcctttgagatgtaa |
33798857 |
T |
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