View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17589_low_19 (Length: 254)

Name: NF17589_low_19
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17589_low_19
NF17589_low_19
[»] chr8 (15 HSPs)
chr8 (16-237)||(6368793-6369014)
chr8 (33-236)||(6389792-6389995)
chr8 (29-199)||(6362031-6362201)
chr8 (58-224)||(6273386-6273552)
chr8 (31-210)||(6409039-6409218)
chr8 (16-205)||(7457874-7458063)
chr8 (16-205)||(7470276-7470465)
chr8 (60-210)||(6423094-6423244)
chr8 (88-210)||(6330757-6330879)
chr8 (29-200)||(6351146-6351317)
chr8 (90-210)||(6320297-6320417)
chr8 (72-199)||(6287651-6287778)
chr8 (114-174)||(6262233-6262293)
chr8 (92-174)||(6456125-6456207)
chr8 (93-172)||(6449659-6449738)
[»] chr5 (1 HSPs)
chr5 (93-174)||(9606276-9606357)
[»] chr2 (2 HSPs)
chr2 (129-174)||(42692174-42692219)
chr2 (124-192)||(42689611-42689679)
[»] chr7 (2 HSPs)
chr7 (124-172)||(46708221-46708269)
chr7 (124-172)||(46709186-46709234)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 6368793 - 6369014
Alignment:
Q  16 aatatgtcttcatgtagtccttagcgagctccttaaactcatgggatcctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368793 aatatgtcttcatgtagtccttagcgagctccttaaactcatgtgatcctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccc 6368892  T
Q  116 tccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagtttcaatcaactctgtacgagtttccaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368893 tccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagtttcaatcaactctgtacgagtttccaat 6368992  T
Q  216 ttaacccacttatcagtcttca 237  Q
    ||||||||||||||||||||||    
T  6368993 ttaacccacttatcagtcttca 6369014  T

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Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 6389792 - 6389995
Alignment:
Q  33 tccttagcgagctccttaaactcatgggatcctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtc 132  Q
    |||||||| ||||| | | ||||| ||| ||||||| | |||||||||||| || ||||||||||||||||||  ||||| || || ||| |||||||||    
T  6389792 tccttagcaagctcgtcatactcaggggttcctttctcaggcatgaatcttctgcttttagttggtcggttaacaatgtatccaccgtacggatattgtc 6389891  T
Q  133 caaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagtttcaatcaactctgtacgagtttccaatttaacccacttatcagt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6389892 caaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagtttcaatcaactctgtacgagtttccaatttaacccacttatcagt 6389991  T
Q  233 cttc 236  Q
    ||||    
T  6389992 cttc 6389995  T

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Target: chr8; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 6362031 - 6362201
Alignment:
Q  29 gtagtccttagcgagctccttaaactcatgggatcctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatat 128  Q
    |||||||||||| ||||| | | ||||| ||||||| | | | |||||||||||| |  |||||||||||||||||| ||| || ||||||||| |||||    
T  6362031 gtagtccttagcaagctcatcatactcaggggatccctgctcaggcatgaatcttctacttttagttggtcggttaacgatatatcctccatacggatat 6362130  T
Q  129 tgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagtttcaatcaactc 199  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6362131 tgtccaaaattaactgctgcatgaagtgctgaagcaatccatatgagggtggtgcaagcttcaatcaactc 6362201  T

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Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 58 - 224
Target Start/End: Original strand, 6273386 - 6273552
Alignment:
Q  58 gggatcctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgc 157  Q
    |||||||||||   ||||| |||||| || ||||||||||||||||||| ||||| || || ||| ||||||||||||||||||||||||||||||||||    
T  6273386 gggatcctttcttaggcattaatcttctgcttttagttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagctgcatgaagtgc 6273485  T
Q  158 tgaagcaatccatatgagggtggtgcaagtttcaatcaactctgtacgagtttccaatttaacccac 224  Q
    ||||||||||||||||||||| |||||||  |||||||||||||| ||||||| ||  |||||||||    
T  6273486 tgaagcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttgcatcttaacccac 6273552  T

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Target: chr8; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 6409039 - 6409218
Alignment:
Q  31 agtccttagcgagctccttaaactcatgggatcctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattg 130  Q
    |||||| ||| ||||| | | ||||| ||| ||||||| | |||||||||||| |  ||||||||||||||||||  ||||| || || ||  |||||||    
T  6409039 agtcctgagcaagctcgtcatactcaggggttcctttctcaggcatgaatcttctacttttagttggtcggttaacaatgtatccaccgtaaggatattg 6409138  T
Q  131 tccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagtttcaatcaactctgtacgagttt 210  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  6409139 tccaaaattaacagctgcatgaagtgctgaagccatccaaatgagggtggtgcaagtttcaatcaactctgcacgagttt 6409218  T

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Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 7457874 - 7458063
Alignment:
Q  16 aatatgtcttcatgtagtccttagcgagctccttaaactcatgggatcctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccc 115  Q
    |||| ||||||  |||||||||||| ||||| | | |||||  |||||||||| | |||||||||||| |  |||| ||||||||||||||||| || ||    
T  7457874 aataagtcttctggtagtccttagcaagctcatcatactcaacggatcctttctcaggcatgaatcttctactttttgttggtcggttaaggatatatcc 7457973  T
Q  116 tccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagtttcaatcaactctgtacg 205  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||  ||||||| |||||    
T  7457974 tccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaagcttctttcaactccgtacg 7458063  T

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Target: chr8; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 7470276 - 7470465
Alignment:
Q  16 aatatgtcttcatgtagtccttagcgagctccttaaactcatgggatcctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccc 115  Q
    |||| ||||||  |||||||||||| ||||| | | | |||  |||||||||| | |||||||||||| |  |||| ||||||||||||||||| || ||    
T  7470276 aataagtcttctggtagtccttagcaagctcatcatattcaacggatcctttctcaggcatgaatcttctactttttgttggtcggttaaggatatatcc 7470375  T
Q  116 tccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagtttcaatcaactctgtacg 205  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||  ||||||| |||||    
T  7470376 tccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaagcttctttcaactccgtacg 7470465  T

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Target: chr8; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 210
Target Start/End: Original strand, 6423094 - 6423244
Alignment:
Q  60 gatcctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctg 159  Q
    ||||||||| | |||||||||||  || | ||||||||||||||||||||||| ||||||||  | ||||||||||||||||||||||||||||||||||    
T  6423094 gatcctttctcaggcatgaatctcctgctcttagttggtcggttaaggatgtatcctccatatgggtattgtccaaaattaacagctgcatgaagtgctg 6423193  T
Q  160 aagcaatccatatgagggtggtgcaagtttcaatcaactctgtacgagttt 210  Q
    ||||||||||||| ||| ||||| ||| ||| |||||||| | ||||||||    
T  6423194 aagcaatccatataaggatggtggaagcttcgatcaactccgcacgagttt 6423244  T

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Target: chr8; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 6330757 - 6330879
Alignment:
Q  88 ttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagt 187  Q
    ||||||||||||||||||| || || ||||||||  ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||     
T  6330757 ttttagttggtcggttaagtatatatcctccatatggatattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagc 6330856  T
Q  188 ttcaatcaactctgtacgagttt 210  Q
    ||||||||||||||||| |||||    
T  6330857 ttcaatcaactctgtacaagttt 6330879  T

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Target: chr8; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 6351146 - 6351317
Alignment:
Q  29 gtagtccttagcgagctccttaaactcatgggatcctttcactggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatat 128  Q
    |||||||||||| ||||| | | ||||| | ||||||||| | |||||||||||| |  | || ||||| ||||||||||| || ||||||||  |||||    
T  6351146 gtagtccttagcaagctcatcatactcaggtgatcctttctcaggcatgaatcttctactctttgttggccggttaaggatatatcctccatatggatat 6351245  T
Q  129 tgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagtttcaatcaactct 200  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||| |||||||||    
T  6351246 tgtccgaaattaacagctgcatgaagtgctgaagcaatccatataaggatggtggaagcttcgatcaactct 6351317  T

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Target: chr8; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 6320297 - 6320417
Alignment:
Q  90 ttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagttt 189  Q
    ||||||||||||||||| || || ||||||||  | ||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| ||    
T  6320297 ttagttggtcggttaagtatatatcctccatatgggtattgaccaaaattaacagctgcatgatgtgctgaagcaatccatatgaggatagtgcaagctt 6320396  T
Q  190 caatcaactctgtacgagttt 210  Q
    ||||||||||||||| |||||    
T  6320397 caatcaactctgtacaagttt 6320417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 6287651 - 6287778
Alignment:
Q  72 ggcatgaatcttatggttttagttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccata 171  Q
    ||||| |||||| || |||| |||||||||||||| ||||| || || ||| |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  6287651 ggcattaatcttctgctttttgttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagccgcatgaagtgccgaagcaatccata 6287750  T
Q  172 tgagggtggtgcaagtttcaatcaactc 199  Q
    ||||| |||||||||  |||||||||||    
T  6287751 tgaggatggtgcaagcctcaatcaactc 6287778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 6262233 - 6262293
Alignment:
Q  114 cctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 174  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  6262233 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccatatga 6262293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 6456125 - 6456207
Alignment:
Q  92 agttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 174  Q
    |||||| ||||| ||||| || ||||||||  |||| |||||||| ||||| ||||||||||| ||||||||| |||||||||    
T  6456125 agttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatga 6456207  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 6449659 - 6449738
Alignment:
Q  93 gttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 172  Q
    ||||| ||||| ||||| || ||||| ||  |||||||||| |||||||||||||||||||| || |||||| |||||||    
T  6449659 gttggacggttcaggatatatcctccgtaaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatat 6449738  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 9606357 - 9606276
Alignment:
Q  93 gttggtcggttaaggatgtaccctccatactgatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 174  Q
    ||||| ||||| || || || ||||||||  ||||||||||||||||||||||||||||||| || |||||| |||||||||    
T  9606357 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 9606276  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 42692174 - 42692219
Alignment:
Q  129 tgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 174  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  42692174 tgtccaaaattaacagctgcatgaagagctgaagcaatccatatga 42692219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 42689679 - 42689611
Alignment:
Q  124 gatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtggtgcaagtttcaa 192  Q
    ||||||||||||||||||||||||| || || ||||||||  ||||||||| | | ||||||| |||||    
T  42689679 gatattgtccaaaattaacagctgcgtggagggctgaagccgtccatatgatgatagtgcaagcttcaa 42689611  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 46708221 - 46708269
Alignment:
Q  124 gatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 172  Q
    ||||||||||||| || ||||||||||| || |||||||||||||||||    
T  46708221 gatattgtccaaattttacagctgcatgtagggctgaagcaatccatat 46708269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 46709186 - 46709234
Alignment:
Q  124 gatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 172  Q
    ||||||||||||| || ||||||||||| || |||||||||||||||||    
T  46709186 gatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 46709234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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