View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17589_low_2 (Length: 466)

Name: NF17589_low_2
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17589_low_2
NF17589_low_2
[»] chr2 (1 HSPs)
chr2 (21-452)||(17831344-17831775)
[»] chr4 (4 HSPs)
chr4 (21-448)||(7135399-7135805)
chr4 (194-321)||(52525386-52525515)
chr4 (92-252)||(22292156-22292316)
chr4 (369-444)||(52525311-52525386)
[»] chr8 (3 HSPs)
chr8 (171-252)||(5658334-5658415)
chr8 (178-251)||(14677485-14677558)
chr8 (171-252)||(31100334-31100415)
[»] scaffold0045 (1 HSPs)
scaffold0045 (172-252)||(11096-11176)
[»] chr6 (2 HSPs)
chr6 (178-252)||(10093043-10093117)
chr6 (171-252)||(33044908-33044989)
[»] scaffold0035 (1 HSPs)
scaffold0035 (171-251)||(35639-35719)
[»] chr7 (1 HSPs)
chr7 (167-226)||(37362214-37362273)
[»] chr3 (1 HSPs)
chr3 (207-252)||(17682380-17682425)


Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 21 - 452
Target Start/End: Original strand, 17831344 - 17831775
Alignment:
Q  21 acagaaaccatcacaattcaacttctccagagaaagagaaagatgacatcgtaatatgaaccgaaatctttcatcgtttctctctcccttcatcaacaat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| || ||    
T  17831344 acagaaaccatcacaattcaacttctccagagaaagagaaagatgtcatcgtaatatgaaccgaaatctttcgtcgtttctctctcccttcatcgacgat 17831443  T
Q  121 gcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaata 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17831444 gcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaata 17831543  T
Q  221 gttttaccctttctatgaattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttatggagtcaatcattcttcact 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  17831544 gttttaccctttctatgaattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttatggagtcaatcattcttcatt 17831643  T
Q  321 attctcagtttatctccctctccaacgcttaagatgactcagattttcaaaaatcggaggtattgaatgttcaggtattcccaaaattgttcatcttttc 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17831644 attctcagtttatctccctctccaacgcttaagatgactcagattttaaaaaatcggaggtattgaatgttcaggtattcccaaaattgttcatcttttc 17831743  T
Q  421 actttcaccttcttcttcatttcggtgatgat 452  Q
    ||||||||||||||| ||||||||||||||||    
T  17831744 actttcaccttcttcatcatttcggtgatgat 17831775  T

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Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 21 - 448
Target Start/End: Original strand, 7135399 - 7135805
Alignment:
Q  21 acagaaaccatcacaattcaacttctccagagaaagagaaagatgacatcgtaatatgaaccgaaatctttcatcgtttctctctcccttcatcaacaat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  7135399 acagaaaccatcacaattcaacttctccagagaaagagaaagatgtcatcgtaatatgaaccgaaatcttccgtcgtttctctctcccttcatcaacaat 7135498  T
Q  121 gcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaata 220  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7135499 gcttcttctgttgctaaatctcaaacatccatcatacttaatgctctattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaata 7135598  T
Q  221 gttttaccctttctatgaattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttatggagtcaatcattcttcact 320  Q
    |||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7135599 gtttt---------------------ttgtttctctgaagtttagttctcagtttcactttcatcccctagaatccttatggagtcaatcattcttcact 7135677  T
Q  321 attctcagtttatctccctctccaacgcttaagatgactcagattttcaaaaatcggaggtattgaatgttcaggtattcccaaaattgttcatcttttc 420  Q
    ||||||| ||| |||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7135678 attctcattttttctccctctccaacgcttgagatgactaagattttcaaaaatcggatgtattgaatgttcaggtattcccaaaattgttcatcttttc 7135777  T
Q  421 actttcaccttcttcttcatttcggtga 448  Q
    |||||||||||||||| |||||||||||    
T  7135778 actttcaccttcttctccatttcggtga 7135805  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 194 - 321
Target Start/End: Complemental strand, 52525515 - 52525386
Alignment:
Q  194 ttttgtgaattttctctcaaggtaatagttttaccctttctatg--aattgaattttgtttctctgaagtttagttctcagtttcactttcatcccctag 291  Q
    |||||||||||||||||||||||||| ||||||||||||||||   |||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  52525515 ttttgtgaattttctctcaaggtaatcgttttaccctttctatagaaattgaatttcgtttctctgaatttcagttctcagtttcactttcatcccctag 52525416  T
Q  292 aatccttatggagtcaatcattcttcacta 321  Q
    || | |||||||||||||||||||| ||||    
T  52525415 aacctttatggagtcaatcattctttacta 52525386  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 92 - 252
Target Start/End: Complemental strand, 22292316 - 22292156
Alignment:
Q  92 catcgtttctctctcccttcatcaacaatgcttcttctgttgctaaatcttaaacatccatcatgcttaatgttttattccatcgttgttcagatttgtt 191  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||| ||||| | |||||||| |||||||||| |   ||||| |  |||||||||||| |    
T  22292316 catcgttgctctctccgttcatcaacaaagcttctcccgttgctgaatctaagacatccattatgcttaatgctcccttccaccactgttcagatttgct 22292217  T
Q  192 gattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 252  Q
     |||||| ||| |||||||||||||||| | ||| ||||||||||| |||||||| |||||    
T  22292216 aattttgcgaagtttctctcaaggtaatcgcttttccctttctatgtattgaattgtgttt 22292156  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 369 - 444
Target Start/End: Complemental strand, 52525386 - 52525311
Alignment:
Q  369 aaaaatcggaggtattgaatgttcaggtattcccaaaattgttcatcttttcactttcaccttcttcttcatttcg 444  Q
    |||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  52525386 aaaaattggaggtgttgaatgttcaggcattcccaaaattgttcatcttttcactttcaccttcttctccatttcg 52525311  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 5658334 - 5658415
Alignment:
Q  171 ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 252  Q
    ||||||||||||||||||| | ||||||  || |||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  5658334 ccatcgttgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt 5658415  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 14677558 - 14677485
Alignment:
Q  178 tgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtt 251  Q
    |||||||||||| | ||||||  || |||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  14677558 tgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgtt 14677485  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 31100415 - 31100334
Alignment:
Q  171 ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 252  Q
    |||||| |||||||||||| | ||||||  || |||||||||||||||||| |||  | ||||||||||||||||| |||||    
T  31100415 ccatcgctgttcagatttgctaattttgcaaagtttctctcaaggtaatagctttttcttttctatgaattgaattgtgttt 31100334  T

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Target: scaffold0045 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 11176 - 11096
Alignment:
Q  172 catcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 252  Q
    |||||||||||| ||||| | ||||||  || |||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  11176 catcgttgttcaaatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt 11096  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 10093043 - 10093117
Alignment:
Q  178 tgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 252  Q
    |||||||||||| | ||||||  || |||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  10093043 tgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccctttctatgaattgaattgtgttt 10093117  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 33044989 - 33044908
Alignment:
Q  171 ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgttt 252  Q
    |||||| |||||||||||| | ||||||  || |||||||||||||||||| ||| || ||||||||||||||||| |||||    
T  33044989 ccatcgctgttcagatttgctaattttgcaaagtttctctcaaggtaatagcttttccttttctatgaattgaattgtgttt 33044908  T

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Target: scaffold0035 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 35639 - 35719
Alignment:
Q  171 ccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagttttaccctttctatgaattgaattttgtt 251  Q
    |||||| |||||||||||| | ||||||  || ||| |||||||||||||| ||| |||||||||||||||||||| ||||    
T  35639 ccatcgctgttcagatttgctaattttgcaaagtttatctcaaggtaatagcttttccctttctatgaattgaattgtgtt 35719  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 37362273 - 37362214
Alignment:
Q  167 tattccatcgttgttcagatttgttgattttgtgaattttctctcaaggtaatagtttta 226  Q
    ||||||||| ||||||| ||||||| ||||| |||||||||||||||||| || ||||||    
T  37362273 tattccatcattgttcatatttgtttattttatgaattttctctcaaggttatcgtttta 37362214  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 17682380 - 17682425
Alignment:
Q  207 ctctcaaggtaatagttttaccctttctatgaattgaattttgttt 252  Q
    ||||||||||||| ||||| |||||||||||||||||||| |||||    
T  17682380 ctctcaaggtaatcgtttttccctttctatgaattgaattgtgttt 17682425  T

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