View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_22 (Length: 250)
Name: NF17589_low_22
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 126592 - 126831
Alignment:
| Q |
1 |
tttcatgaggttcaaggtacgacttcatcttgaaactatccatttataaaatcaaaacctactataccaatttctgttgaaatttcctgctcacttcttt |
100 |
Q |
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| T |
126592 |
tttcatgaggttcaaggtacgacttcatcttgaaactatccatttataaaatcaaaagctactataccaatttctgttgaaatttcctgctcacttcttt |
126691 |
T |
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| Q |
101 |
tgtcattctctcctttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaaggatttgattttgattttttaactgtaaacatatttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
126692 |
tgtcattctctcctttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaaggatttgattttgattttttaactgcaaacatacttca |
126791 |
T |
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| Q |
201 |
attacttttatgagtatttatgacatcttttcttcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
126792 |
attacttttatgagtatttatgacatcttttcttcctatg |
126831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 33058273 - 33058512
Alignment:
| Q |
1 |
tttcatgaggttcaaggtacgacttcatcttgaaactatccatttataaaatcaaaacctactataccaatttctgttgaaatttcctgctcacttcttt |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||| |||||||||||||||||||||| ||||||| |
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| T |
33058273 |
tttcatgaggttcaaggtacggcttcatcttgaaactatccatttataatatcagaagctactatacttatttctgttgaaatttcctgctatcttcttt |
33058372 |
T |
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| Q |
101 |
tgtcattctctcctttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaaggatttgattttgattttttaactgtaaacatatttca |
200 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
33058373 |
tgtcattccctactttaaaggttgtggtataggtaaattgaaatgaaatgctaatgttgtaaggatttgattttgattttttaactgcaaacatgcttca |
33058472 |
T |
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| Q |
201 |
attacttttatgagtatttatgacatcttttcttcctatg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
33058473 |
gttacttttatgagtatttatgacatcttttcttcctatg |
33058512 |
T |
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