View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_23 (Length: 249)
Name: NF17589_low_23
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 45223375 - 45223613
Alignment:
| Q |
11 |
cacagacaaccgtttcttccctatttcactatttctacttcctatagctcatttcagttctcaattgaaccatagaacttcaattcatgatgaaggaatc |
110 |
Q |
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| T |
45223375 |
cacacacaaccgtttcttccctatttcactatttctacttcctatagctcatttcagttctcaattgaaccatagaacttcaattcatgatgaaggaatc |
45223474 |
T |
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| Q |
111 |
aacaacagaatcagacccaataactatttgtctgaacctcaccaattcactcatagaaaacgaaatccccaccgtccatcacttaaaaaccaaatggtca |
210 |
Q |
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| T |
45223475 |
aacaacagaagcagacccaataactatttgtctgaacctcaccaattcactcatagaaaacgaaatccccaccgtccatcacttaaaaaccaaatggtca |
45223574 |
T |
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| Q |
211 |
atcttcggagtcaaactaacccaactccaaacccacctc |
249 |
Q |
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| T |
45223575 |
atcttcggagtcaaactaacccaactccaaacccacctc |
45223613 |
T |
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