View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17589_low_25 (Length: 244)
Name: NF17589_low_25
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 39307867 - 39307653
Alignment:
| Q |
20 |
acaagatcctgaggtagcactttctagcacaattctcaacgttcctcctctcatttcctttgctaaaacacttgttggaattgcaagttctaaaagaaga |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39307867 |
acaagatcctgaggtagcactttctagcacaattctcaacgttcctcctctcatttcctttgctaaaacacttgttggaattgcaagttctaaaagaaga |
39307768 |
T |
|
| Q |
120 |
atagggtttgtggaatttgagttggattgaatacaaaaacttacttttcctttacggtatccgaatatcgtgccagtaattgttgtagatgtcatgagtg |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39307767 |
atagggtttgtggaatttgagctggattgaatacaaaaacttacttttcctttacggtatccgaatatcgtgccagtaattgttgtagatgtcatgagtg |
39307668 |
T |
|
| Q |
220 |
aagaatgtgatgatg |
234 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39307667 |
aagaatgtgatgatg |
39307653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 37494870 - 37494697
Alignment:
| Q |
51 |
attctcaacgttcctcctctcatttcctttgctaaaacacttgttggaattgcaagttctaaaagaagaatagggtttgtggaatttgagttggattgaa |
150 |
Q |
| |
|
|||||||| |||||||||| ||||||| | ||||||| ||| ||| | ||| | ||||| ||| ||||| ||| | ||||| |||| || ||||||| |
|
|
| T |
37494870 |
attctcaatgttcctcctcgcatttccctcgctaaaatgtttgctggtactgctaattctagaaggagaattggggtagtggagtttgcatttgattgaa |
37494771 |
T |
|
| Q |
151 |
tacaaaaacttacttttcctttacggtatccgaatatcgtgccagtaattgttgtagatgtcatgagtgaagaa |
224 |
Q |
| |
|
| |||||||||| ||||||||| |||||||| ||||| ||||| ||||| || || |||| ||||||||||| |
|
|
| T |
37494770 |
tgcaaaaacttatttttcctttgcggtatccaaatattgtgcctgtaatggtggtggatggtgtgagtgaagaa |
37494697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University