View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_26 (Length: 239)
Name: NF17589_low_26
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 47660936 - 47660849
Alignment:
| Q |
139 |
atggaacataattagccagcattcaacnnnnnnncatatagagaaacaaattaacgattatgaacttacctgagtcatttcacctttg |
226 |
Q |
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| T |
47660936 |
atggaacataattagccagcattcaactttttttcatatagagaaacaaattaacgattgtgaacttacctgagtcatttcacctttg |
47660849 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 47661058 - 47661004
Alignment:
| Q |
18 |
acgaccacctctctccaacactttctcaatgttatcaagcataacggttctcacc |
72 |
Q |
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| T |
47661058 |
acgaccacctctctccaacactttctcaatgttatcaagcataacggttctcacc |
47661004 |
T |
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