View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_28 (Length: 236)
Name: NF17589_low_28
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 126310 - 126090
Alignment:
| Q |
1 |
ccgaggagtgtccgtgaatgtaatcccatgaagcaatacaatacaatctaggtgatgacattga--ccatgttgcatttaggtttcattccgtagttctg |
98 |
Q |
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| T |
126310 |
ccgaggagtgtccgtgaatgtaatcccacgaagcaatacaatacaatctaggtgatgacactgaaaccatgttgcatttaggtttcattccgtagttctg |
126211 |
T |
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| Q |
99 |
atactctttttactctagaggttccataccaaaattggacattatatttaacatcaaacagttccaaaacaattctaaagctaattggttttaaactgaa |
198 |
Q |
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| T |
126210 |
atactctttttactctagaggttccataccaaaattggacattatatttaacatcaaacagttccaaaacaattctaaagctaattggttttaaactgaa |
126111 |
T |
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| Q |
199 |
aacaataaagcatgttcacaac |
220 |
Q |
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|||||| ||||||||||||||| |
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| T |
126110 |
aacaat-aagcatgttcacaac |
126090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 220
Target Start/End: Complemental strand, 47608530 - 47608356
Alignment:
| Q |
35 |
aatacaatacaatctaggtgatgaca-ttga--ccatgttgcatttaggtttcattccgtagttctgatactctttttactctagaggttccataccaaa |
131 |
Q |
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| T |
47608530 |
aatacaatacaatctaggtgatgacccttgaaaccatgttgcatataggtttcattccgcagttatgatactctt----------------cataacaaa |
47608447 |
T |
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| Q |
132 |
attggacattatatttaacatcaaacagttccaaaacaattctaaagcta-attggttttaaac-tgaaaacaataaagcatgttcacaac |
220 |
Q |
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| T |
47608446 |
attggacattatatttaacatcaaagagttccaaaacaattctaaagttatattggttttaaacaaaaaaacaatgaagcatgttcacaac |
47608356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 49543006 - 49542966
Alignment:
| Q |
165 |
aaacaattctaaagcta-attggttttaaactgaaaacaat |
204 |
Q |
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| T |
49543006 |
aaacaattctaaagctatattggttttaaactaaaaacaat |
49542966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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