View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_4 (Length: 440)
Name: NF17589_low_4
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 10917407 - 10917001
Alignment:
| Q |
16 |
gagatcactagctagaaagagttctgttgatcatggatatgtttgtggaaacaatgatgataatggccatggcaatgtacgttaaaatcaatataatact |
115 |
Q |
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| T |
10917407 |
gagatcactagcaagaaagagttctgttgatcatggatatgtttgtggaaacaatgatgataatggccatggcaatgtacgttaaaatcaatataatact |
10917308 |
T |
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| Q |
116 |
aattatggtggaaaaatgacttggttcaacaataatgaaactgatgattgtggattatacatggattatggatatagtggaagaaaatactgctgatgtt |
215 |
Q |
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| T |
10917307 |
aattatggtggaaaaatgacttggttcaacaataatgaaactgatgattgtggattatacatggattatggatatagtggaagaaaatactgctgatgtt |
10917208 |
T |
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| Q |
216 |
tgtaatggtaatcatattaaaggtcataattataatgatatatatgaagaaatacaggtggtgtctttgtccaccaagcattattatgttatttttcata |
315 |
Q |
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| T |
10917207 |
tgtaatggtaatcatattaaaggtcataattataatgatatatatgaagaaatacaggtggtgtctttgtccaccaagcattattatgttatttttcata |
10917108 |
T |
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| Q |
316 |
tatgattcgggtggatctgagagggtggttgagttgcttagatacgtcgttcattggggttgagccacccgtctgtctgtcgtttgtctggttcaattga |
415 |
Q |
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| T |
10917107 |
tatgattcgggtggatatgagaggatggttgagttgcttagatacgtcgttcgttggggttgagccacctatttgtctgccgtttgtctggttcagttga |
10917008 |
T |
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| Q |
416 |
attgtgg |
422 |
Q |
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| T |
10917007 |
attgtgg |
10917001 |
T |
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