View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17589_low_8 (Length: 378)
Name: NF17589_low_8
Description: NF17589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17589_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 31776102 - 31775739
Alignment:
| Q |
1 |
ggacaaagtttgataatgagaggaagattgctttcagaaagacaacatatgaagacaaaccaaaaaatccaagtgtcatgctacaaaatgagaagttgtg |
100 |
Q |
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| T |
31776102 |
ggacagagtttgataatgagaggaagattgctttcagaaagacaacatatgaagacaaaccaaaaaatccaagtgtcatgctacaaaatgagaagttgtg |
31776003 |
T |
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| Q |
101 |
gggggcacaaatgcatcaatgtatgtatgttctgggaaaaataagatttttcacttgttactttattttaatttaatgtgctaaccaataatagaacctt |
200 |
Q |
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| T |
31776002 |
gggggcacaaatgcatcaatgtatgtatgttctggg-aaaataagatttttcacttgttactttattttaatttaatgtgctaaccaataatagaacctt |
31775904 |
T |
|
| Q |
201 |
gaacacagacttacccgtgtgtgtt---ataatattgtgagaataaaacctaagctacgtacgagggtatctgtgctagtcaatctcttttaatcgggtc |
297 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
31775903 |
gaacacagacttacccgtgtgtgttataataatattgtgagaataaaacctaagctacgtacgaggatatccgtgctagtcaatctcttttaatcgggtc |
31775804 |
T |
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| Q |
298 |
gcttaaacttgcaggttatatgaatagggttagtgtataagcaaaagatagacaattgctcttta |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31775803 |
gcttaaacttgcaggttatatgaatagggttagtgtatacgcaaaagatagacaattgctcttta |
31775739 |
T |
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