View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1758_high_10 (Length: 456)

Name: NF1758_high_10
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1758_high_10
NF1758_high_10
[»] chr1 (2 HSPs)
chr1 (27-171)||(45288327-45288478)
chr1 (324-409)||(48214124-48214210)
[»] chr4 (2 HSPs)
chr4 (34-171)||(31608309-31608453)
chr4 (273-310)||(55321889-55321926)
[»] scaffold0049 (1 HSPs)
scaffold0049 (293-377)||(64103-64186)
[»] chr3 (1 HSPs)
chr3 (293-377)||(22900429-22900512)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 45288327 - 45288478
Alignment:
Q  27 ttatccgtaataaaaggtgaataaaacatttgtaaaatccaatttcaattataaacatcaaacaaatgagtaaaacataaaaatgataatttaccatcca 126  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  45288327 ttatctgtaataaaaggtgaataaaacatttgtaaaatccaatttcaattataaacatcaaacaaatgagt-aaacataaaaatggtaatttagcatcca 45288425  T
Q  127 tgag--------atcacatttttctttgacctcagaacttgattatgagtaaa 171  Q
    ||||        ||||| ||||||||| ||||| | |||||||||||||||||    
T  45288426 tgagagactcatatcacctttttctttaacctcggcacttgattatgagtaaa 45288478  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 409
Target Start/End: Original strand, 48214124 - 48214210
Alignment:
Q  324 tgaaggtatcttgagaatgaatgactcaacccaatagctcctgcaatttcaattt-caacaatgtgcttatcaaatggagttatcac 409  Q
    ||||| |||||||||||||||||| |||| |  |||||||||||||||  ||||| || | |||||| ||||||||| |||||||||    
T  48214124 tgaagatatcttgagaatgaatgattcaaactcatagctcctgcaattggaatttgcagctatgtgcctatcaaatgcagttatcac 48214210  T

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Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 34 - 171
Target Start/End: Complemental strand, 31608453 - 31608309
Alignment:
Q  34 taataaaaggtgaataaaacatttgtaaaatccaatttcaattataaacatcaaacaaatgagtaaaacataaaaatgataatttaccatccatgag--- 130  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||       
T  31608453 taataaaagttgaataaaacatttgtaaaatccaatttcaattataaacatcaaacaaatgagt-aaacataaaaatggtaatttagcatccatgagaga 31608355  T
Q  131 -----atcacatttttctttgacctcagaacttgattatgagtaaa 171  Q
         ||||| ||||||||| ||||| | |||||||||||||||||    
T  31608354 ctcatatcacctttttctttaacctcggcacttgattatgagtaaa 31608309  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 55321889 - 55321926
Alignment:
Q  273 aaacgaatatgaaacaaaataaacacataccatttctt 310  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  55321889 aaacgaatatgaaacaaaataaaaacataccatttctt 55321926  T

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Target: scaffold0049 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 377
Target Start/End: Original strand, 64103 - 64186
Alignment:
Q  293 aaacacataccatttcttgttgctttttctatgaaggtatcttgagaatgaatgactcaacccaatagctcctgcaatttcaatt 377  Q
    ||||||||||||||| || ||||||||  | ||||| |||||| ||||||||||  ||||||| ||||||||||||||| |||||    
T  64103 aaacacataccatttgtttttgcttttgttgtgaagatatcttaagaatgaatgtttcaaccc-atagctcctgcaattgcaatt 64186  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 377
Target Start/End: Complemental strand, 22900512 - 22900429
Alignment:
Q  293 aaacacataccatttcttgttgctttttctatgaaggtatcttgagaatgaatgactcaacccaatagctcctgcaatttcaatt 377  Q
    ||||||||||| ||| ||||| ||||| || | ||| || ||||||||||||||| ||||||| ||||||||| ||||| |||||    
T  22900512 aaacacataccgtttgttgtttcttttgctgtcaagataccttgagaatgaatgattcaaccc-atagctcctacaattgcaatt 22900429  T

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