View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_high_14 (Length: 411)
Name: NF1758_high_14
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 9081124 - 9080745
Alignment:
| Q |
19 |
caatttagaatttacggtcgagatctttgtgatatatccaattaaatattgagattcaagacagagtaaaacaaatatgttttctgaacagccgactatt |
118 |
Q |
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| T |
9081124 |
caatttagaatttatggtcgagatctttgtgatatatccaattaaatattgagattcaagacagagtaaaacaaatatgttttctgaacagccgactatt |
9081025 |
T |
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| Q |
119 |
cggatctaggcgtttacaaataaaaatacttcggaggctaaaaaataaacagttgnnnnnnnntactgtgatatttcaatgtaaatgttattttaacaaa |
218 |
Q |
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| T |
9081024 |
cggatctaggcgtttacaaataaaaatactttggaggctaaaaaataaacagttgaaaaaaaatactgtgatatttcaatgtaaatgttattttaacaaa |
9080925 |
T |
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| Q |
219 |
aaatatatttaaaataacattagattcttgtgacttgtgagtcaatgacacaaagtatttcttcaccaaatgacattacattctttataaatagatatgt |
318 |
Q |
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| T |
9080924 |
aaatatatttaaaataacattagatt-------cttgtgagtcaatgacacaaagtatttcttcaccaaatgacattacattctttataaatagatatgt |
9080832 |
T |
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| Q |
319 |
ttgggaggctaaaaaatgacacaaaatcatattctttgtgagttaagatttgtcagaaaataatataaaacaatttcttcttctctct |
406 |
Q |
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| T |
9080831 |
ttgggaggctaaaaaatgacacaaaatcatattc-ttgtgagttaagatttgtcagaaaataatataaaacaatttcttcttttctct |
9080745 |
T |
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