View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_high_2 (Length: 617)
Name: NF1758_high_2
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_2 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 16 - 617
Target Start/End: Original strand, 49708112 - 49708713
Alignment:
| Q |
16 |
cctgtggttcaaacaatttttgttaagttgattgccaattaaatacacaatgtattttatttttgctagaaagaggaaacaatcaacaacacctttatag |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49708112 |
cctgtggttcaaacaacttttgttaagttgattgccaattaaatacacaatgtattttatttttgctagaaagaggaaacaatcaacaacacctttatag |
49708211 |
T |
|
| Q |
116 |
cctcttgaaagaaaagaacagtgattagcatgccaaataactcccctgcaattcttgtaaatctagtgataatattgcaagcattgaaaattgcaagcaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49708212 |
cctcttgaaagaaaagaacagtgattagcatgccaaataactcccctgcaattcttgtaaatctagtgataatattgcaagcattgaaaattgcaagcaa |
49708311 |
T |
|
| Q |
216 |
aattaacatcaatgccgtccaaacacaaaccctggaacacaaatacgaacattttagttcgatacatattgtgattatataactgtaaaaacccttaaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49708312 |
aattaacatcaatgccgtccaaacacaaaccctggaacacaaatacgaacattttagttcgatacatattgtgattatataactgtaaaaacccttaaac |
49708411 |
T |
|
| Q |
316 |
agaaatttacacaattatgaaaaaataacttaccaaccagcccaagctagaaagagcttggtacccaattgaggtgtatttttgcagaaagtgtagagat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49708412 |
agaaatttacacaattatgaaaaaataacttaccaaccagcccaagctagaaagagcttggtacccaattgaggtgtatttttgcagaaagtgtaaagat |
49708511 |
T |
|
| Q |
416 |
aagtgtacattataacagttggttctgcaactcctaaaatcaacaaaggttggccacctataattgaatgaataattccacaaatggcagtagatgccaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49708512 |
aagtgtacattataacagttggttctgcaactcctaaaatcaacaaaggttggccacctataattgaatgaataattccacaaatggcagtagatgccaa |
49708611 |
T |
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| Q |
516 |
tgtttctacggtgctcaagcttccatctgtatccctactaagttgttctccgaaagcaataaccggaagagcggacgcaaagaatatgtagaaagttgga |
615 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
49708612 |
tgtttctacagtgctcaagcttccatctgtatccctactaagttgttctccgaaagcaataaccggaagagcggacgcagaaaatatgtagaaagttgga |
49708711 |
T |
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| Q |
616 |
gc |
617 |
Q |
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|| |
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| T |
49708712 |
gc |
49708713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 343 - 546
Target Start/End: Complemental strand, 2233231 - 2233028
Alignment:
| Q |
343 |
acttaccaaccagcccaagctagaaagagcttggtacccaattgaggtgtatttttgcagaaagtgtagagataagtgtacattataacagttggttctg |
442 |
Q |
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|||||||||||||||||||| | ||| ||||||| ||| |||| ||| | ||| |||| ||| |||| ||| |||||||| |||||||||||||| | |
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| T |
2233231 |
acttaccaaccagcccaagccaaaaacagcttggcacctaattctggtctttttgtgcaaaaactgtatagaatggtgtacatgataacagttggttcag |
2233132 |
T |
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| Q |
443 |
caactcctaaaatcaacaaaggttggccacctataattgaatgaataattccacaaatggcagtagatgccaatgtttctacggtgctcaagcttccatc |
542 |
Q |
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||| ||||| ||||||||||||||| ||||| | ||||| || ||||||||||| || || || |||| ||||||||| || ||||||||| ||||| | |
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| T |
2233131 |
caattcctacaatcaacaaaggttgaccaccaaatattgagtggataattccacatatagctgtggatgtcaatgtttcaactgtgctcaagattccacc |
2233032 |
T |
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| Q |
543 |
tgta |
546 |
Q |
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|||| |
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| T |
2233031 |
tgta |
2233028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 106 - 254
Target Start/End: Complemental strand, 2233583 - 2233435
Alignment:
| Q |
106 |
acctttatagcctcttgaaagaaaagaacagtgattagcatgccaaataactcccctgcaattcttgtaaatctagtgataatattgcaagcattgaaaa |
205 |
Q |
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|||| |||||||| ||| | |||||||||||| |||| |||| ||||||| ||| |||||| || ||||| ||||||||||| || |||||||||| |
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| T |
2233583 |
acctctatagcctgttgcatgaaaagaacagtaattaacatggcaaataattcctctgcaaccctagtaaacctagtgataattgaacatgcattgaaaa |
2233484 |
T |
|
| Q |
206 |
ttgcaagcaaaattaacatcaatgccgtccaaacacaaaccctggaaca |
254 |
Q |
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||||||||| || | || ||||| |||||||||||||||||| |||| |
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| T |
2233483 |
ttgcaagcagcatcagcaacaatgatgtccaaacacaaaccctgcaaca |
2233435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 554 - 614
Target Start/End: Complemental strand, 2232101 - 2232041
Alignment:
| Q |
554 |
taagttgttctccgaaagcaataaccggaagagcggacgcaaagaatatgtagaaagttgg |
614 |
Q |
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||||||||||||| ||||||||||| ||||| || || ||||||||||||||||||||||| |
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| T |
2232101 |
taagttgttctccaaaagcaataacaggaagtgcagaagcaaagaatatgtagaaagttgg |
2232041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 520
Target Start/End: Complemental strand, 45078029 - 45077927
Alignment:
| Q |
418 |
gtgtacattataacagttggttctgcaactcctaaaatcaacaaaggttggccacctataattgaatgaataattccacaaatggcagtagatgccaatg |
517 |
Q |
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|||||||| || ||||| |||||||| ||||||||||||| |||||||| ||||| || ||||| || ||||| ||||| || | ||| |||||||| | |
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| T |
45078029 |
gtgtacatgatcacagtaggttctgccactcctaaaatcagtaaaggttgaccaccaatgattgagtgtataatgccacatattgaagttgatgccaagg |
45077930 |
T |
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| Q |
518 |
ttt |
520 |
Q |
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||| |
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| T |
45077929 |
ttt |
45077927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 421 - 520
Target Start/End: Complemental strand, 12306376 - 12306277
Alignment:
| Q |
421 |
tacattataacagttggttctgcaactcctaaaatcaacaaaggttggccacctataattgaatgaataattccacaaatggcagtagatgccaatgttt |
520 |
Q |
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||||| || |||||||||||||| || || | ||||||||||| ||||| || ||||| || || ||||||||||| | ||||||||||| ||||||| |
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| T |
12306376 |
tacatgattacagttggttctgctacaccaagtatcaacaaaggctggcctccaataatagagtgtataattccacacagtgcagtagatgctaatgttt |
12306277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 543
Target Start/End: Original strand, 8504 - 8557
Alignment:
| Q |
490 |
attccacaaatggcagtagatgccaatgtttctacggtgctcaagcttccatct |
543 |
Q |
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|||||||||||||| ||||| |||| |||||| || ||||| |||||||||||| |
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| T |
8504 |
attccacaaatggctgtagaagccagtgtttccacagtgcttaagcttccatct |
8557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 543
Target Start/End: Original strand, 8428 - 8481
Alignment:
| Q |
490 |
attccacaaatggcagtagatgccaatgtttctacggtgctcaagcttccatct |
543 |
Q |
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|||||||||||||| ||||| |||| |||||| || ||||| |||||||||||| |
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| T |
8428 |
attccacaaatggctgtagaagccagtgtttccacagtgcttaagcttccatct |
8481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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