View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_high_20 (Length: 384)
Name: NF1758_high_20
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 53603182 - 53603531
Alignment:
| Q |
20 |
aataactggttttttaattacatgtgatataattgttatccatccatattctaatttgcagcaagattatcactcaagcgtcaattgttgcgttcttcag |
119 |
Q |
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| T |
53603182 |
aataactggtttttcaattacatgtgatataattgttatccatccatattctaatttgcagcaagattatcactcaagcgtcaattgttgcgttcttcag |
53603281 |
T |
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| Q |
120 |
caaccttgcagatgttggccttcatggttcaatgatggtattttatgattttcaagttttatcatgtattttttaaccttaacttagtttgtgatgccac |
219 |
Q |
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| T |
53603282 |
caaccttgcagatgttggccttcatggttcaatgatggtatgttatgattttcaagttttatcatgtattttttaaccttaacttagtttgtgatgccac |
53603381 |
T |
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| Q |
220 |
tctattttttgtgtgcagtattacttaaaggctcggtttcattttgataagaatcactttgctgacttaatgatcatttctggtattgcagggactgtgt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53603382 |
tctattttttgtgtgcagtattacttaaaggctcggtttcattttgataagaatcactttgctgacttaatgatcatttctggtattgcagggactgtgt |
53603481 |
T |
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| Q |
320 |
cacaggtaatttttgtaagaagtgattttagttgtcaaatatcacctatg |
369 |
Q |
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| T |
53603482 |
cacaggtaatttttgtaagacgtgattttagttgtcaaatatcacctatg |
53603531 |
T |
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