View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_high_22 (Length: 375)
Name: NF1758_high_22
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 5110844 - 5111201
Alignment:
| Q |
1 |
actctttgctctttattctctctgcctcactctattattacctcttcacttgcttagctatgagttctaaaaccatcaccacagatgaatttgcacttct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5110844 |
actctttgctctttattctctctgcctcactctattattacctcttcacttgcttagctatgatttctaaaaccatcaccacagatgaatttgcacttct |
5110943 |
T |
|
| Q |
101 |
tgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtcttcatgcaattgggttggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
5110944 |
tgcattcaaatcctcaattaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggt |
5111043 |
T |
|
| Q |
201 |
gttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaactgggaaatctttctttcc |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5111044 |
gttacttgtgatgaacatcatggaagagtgaatgcattggatcttaataacatggaccttgaaggtacaatttctcctcaattgggaaatctttctttcc |
5111143 |
T |
|
| Q |
301 |
ttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttact |
358 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5111144 |
ttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttact |
5111201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 5084222 - 5083870
Alignment:
| Q |
9 |
ctctttattctctctgcctcactctattattacctcttcacttgcttagctatgagttct---aaaaccatcaccacagatgaatttgcacttcttgcat |
105 |
Q |
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|||| |||||||||| | |||||||||||||| ||||||||||||||||||| ||| | |||| ||||||||||||||||||| |||||||||||| |
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| T |
5084222 |
ctctgtattctctctacttcactctattattatttcttcacttgcttagctataagtagtaaaaaaaacatcaccacagatgaattttcacttcttgcat |
5084123 |
T |
|
| Q |
106 |
tcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtcttcatgcaattgggttggtgttac |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5084122 |
tcaaatcctcaattaccttagatccttatcatatgcttagaaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttac |
5084023 |
T |
|
| Q |
206 |
ttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaactgggaaatctttctttccttgtt |
305 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| |
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| T |
5084022 |
ttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatggaccttgaaggtacaatttcccctcaattgggaaatctctctttccttgta |
5083923 |
T |
|
| Q |
306 |
gttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttact |
358 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |
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|
| T |
5083922 |
tttcttgatctacaaggaaatagtttccatggtgagttaccacatgagttact |
5083870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 5093840 - 5094195
Alignment:
| Q |
1 |
actctttgctctttattctctctgcctcactctattattacctcttcacttgcttagctatgagttctaaaaccatcaccaca--gatgaatttgcactt |
98 |
Q |
| |
|
|||||| ||||| |||||||||||| ||||||||||||||| |||||||||| |||| | ||||| ||||| | || | | ||||||||| ||||| |
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| T |
5093840 |
actcttggctctgtattctctctgcttcactctattattacttcttcacttg-ttagttgtgagtagtaaaaaaaacataaaaccgatgaattttcactt |
5093938 |
T |
|
| Q |
99 |
cttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtcttcatgcaattgggttg |
198 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5093939 |
cttgcattcaaatcctcaataaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttgtcttcatgcaattgggttg |
5094038 |
T |
|
| Q |
199 |
gtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaactgggaaatctttcttt |
298 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5094039 |
gtgttacttgtgatgaacaccatggaagagtaaatgcattgaatcttagtagcatgggccttgaaggtacaatttctcctcaattgggaaatctttcttt |
5094138 |
T |
|
| Q |
299 |
ccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagtt |
355 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
5094139 |
ccttattgttcttgatttacagggcaatagtttccatggtgagttaccacatgagtt |
5094195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 14428012 - 14427654
Alignment:
| Q |
1 |
actctttgctctttattctctctgcctcactctattattacctcttcacttgcttagctatgagttctaa---aaccatcaccacagatgaatttgcact |
97 |
Q |
| |
|
|||||| |||||||||||| ||||||||| | ||||||||| ||||||||||||||||| ||||| ||| || | | ||||| ||||||||| |||| |
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|
| T |
14428012 |
actcttggctctttattctttctgcctcaatttattattacttcttcacttgcttagctgtgagtagtaagaaaaacctaaccaccgatgaattttcact |
14427913 |
T |
|
| Q |
98 |
tcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcatcttctacttcttctttgtcttcatgcaattgggtt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |
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|
| T |
14427912 |
tcttgcattcaaatcctcaattaccttagatccttatcatattcttagtaattggtcaatttccacttctgcttcttctttctcttcatgcaattgggtt |
14427813 |
T |
|
| Q |
198 |
ggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggtacaatttctcctcaactgggaaatctttctt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| | |||||||| |||| |
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| T |
14427812 |
ggtgttacttgtgatgaacatcatggaagagtaaatgcattgaatcttagtaacatgggccttgaaggtaacatttctcctcaattaggaaatctctctt |
14427713 |
T |
|
| Q |
298 |
tccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagtta |
356 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
14427712 |
tccttgttgttcttgatctacatggcaatagtttccatggtgagttaccacatgagtta |
14427654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 16872299 - 16872553
Alignment:
| Q |
16 |
ttctctctgcctcactctattattacctcttcacttgcttagctatgagttctaa---aaccatcaccacagatgaatttgcacttcttgcattcaaatc |
112 |
Q |
| |
|
|||||| || |||||| |||||||| ||||||||||||||||||||||| |||| || |||||||| |||||||||| ||||||||||||||||||| |
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| T |
16872299 |
ttctctatgtctcactgcattattacttcttcacttgcttagctatgagtactaacaaaaacatcaccatagatgaattttcacttcttgcattcaaatc |
16872398 |
T |
|
| Q |
113 |
ctcaattaccttagacccttatcacattcttag---taattggtcaatttcatcttctacttcttctttgtcttcatgcaattgggttggtgttacttgt |
209 |
Q |
| |
|
||| |||||||||||||||||||||| ||||| |||||||||||| || ||||||| ||||||| || ||||| |||||||||||||| |||||| |
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|
| T |
16872399 |
ctctattaccttagacccttatcacaagcttagtaataattggtcaatctcctcttcta---cttctttctcatcatgtaattgggttggtgtcacttgt |
16872495 |
T |
|
| Q |
210 |
gatgaacatcatggaagagtaaatgcattgaatcttaataacatggaccttgaaggta |
267 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| ||| |||| |||||||||| |
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|
| T |
16872496 |
gatgagcatcatggaagagtaaaggcattgaatcttagtaatatgggacttgaaggta |
16872553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 16873359 - 16873458
Alignment:
| Q |
259 |
ttgaaggtacaatttctcctcaactgggaaatctttctttccttgttgttcttgatttacaaggcaatagtttctatggtgagttaccacatgagttact |
358 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||| |||||||| |
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|
| T |
16873359 |
ttgaaggtacaatttcctctcaattgggaaatctctctttccttgttattcttgacctacaaggcaatagtttccatggtgagtttccacaagagttact |
16873458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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