View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_high_23 (Length: 369)
Name: NF1758_high_23
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_23 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 43712811 - 43712515
Alignment:
| Q |
17 |
gtaaatcataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43712811 |
gtaaatcataccaggaaactgatagaagaacctattccgacacctaagaagcgaccaagataagaatctgcaataaaagcaccaatcacaggtgtgaaat |
43712712 |
T |
|
| Q |
117 |
tgctagctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaatacaatatcatgtttggtaataatcccac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
43712711 |
tgctagctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccatcaaatacaatatcatgttgggtaatagtcccac |
43712612 |
T |
|
| Q |
217 |
acttgccatcttagcaagtgcttcattccctgcaaataaaacaatcacaacagcaacaaaaccatattatacgtaaaaattcaagctcattcaaagt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43712611 |
acttgccatcttagcaagtgcttcattccctgcaaataaaacaatcacaacagcaacaaaaccatattatacgtaaaaattcaagctcattcaaagt |
43712515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 43697888 - 43697594
Alignment:
| Q |
17 |
gtaaatcataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43697888 |
gtaaatcataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaat |
43697789 |
T |
|
| Q |
117 |
tgctagctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaatacaatatcatgtttggtaataatcccac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
43697788 |
tgctagctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccatcaaatacaatatcatgtttggtaatagtcccaa |
43697689 |
T |
|
| Q |
217 |
acttgccatcttagcaagtgcttcattccctgcaaataaaacaatcacaacagcaacaaaaccatattatacgtaaaaattcaagctcattcaaagt |
313 |
Q |
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|||||||||| |||||||||| ||||||||| ||| |||| |||||||||| ||| | | ||| ||||| | |||||||||||||||||||||| |
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| T |
43697688 |
acttgccatcctagcaagtgcctcattcccttcaatcaaaataatcacaaca-aaaccatattata-tatacatcaaaattcaagctcattcaaagt |
43697594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 43726401 - 43726181
Alignment:
| Q |
23 |
cataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaattgctag |
122 |
Q |
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||||||||||| |||| | | ||||||| ||||||||| ||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43726401 |
cataccaggaagctgacaaatgaacctaatccaacaccgaggaaccgaccgagataagaatctgcaataaaagcaccaaccacaggtgtgaaattgctag |
43726302 |
T |
|
| Q |
123 |
ctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaatacaatatcatgtttggtaataatcccacacttgc |
222 |
Q |
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||||||||||||| ||||| |||||||||| | || |||| ||||| ||||| |||||| |||||||||||||| || || |||| ||||| |||||| |
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| T |
43726301 |
ctgcagaggataagagaagaatctgagtagctttggcaagatgaagcctgtaacttcccatgaaatacaatatcatattgggcaatagtcccaaacttgc |
43726202 |
T |
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| Q |
223 |
catcttagcaagtgcttcatt |
243 |
Q |
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|||| | |||||||| ||||| |
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| T |
43726201 |
catccttgcaagtgcctcatt |
43726181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 243
Target Start/End: Complemental strand, 43685329 - 43685111
Alignment:
| Q |
25 |
taccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaattgctagct |
124 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||| | |||||||||||| | |||| |
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| T |
43685329 |
taccaggaaactgataatagaacctattccaacacctaggaatcgaccaatataagaatctgcaataaaagcagcaacaagaggtgtgaaatttccagct |
43685230 |
T |
|
| Q |
125 |
gcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaatacaatatcatgtttggtaataatcccacacttgcca |
224 |
Q |
| |
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|||||||||| ||||||||||| |||| | || |||| ||||| |||| || ||||| ||||||||||||||||| ||| |||||| |||||||| |
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| T |
43685229 |
gcagaggatatgagaagtatctgggtagctgtggcaagatgaagattgtaagaacccatcaaatacaatatcatgttaggtcctaatccagtacttgcca |
43685130 |
T |
|
| Q |
225 |
tcttagcaagtgcttcatt |
243 |
Q |
| |
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|| |||||||||| ||||| |
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| T |
43685129 |
tcctagcaagtgcctcatt |
43685111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 26045 - 26223
Alignment:
| Q |
23 |
cataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaattgctag |
122 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||| || ||||||||||| | |||||||||||||||||||||||| |||||| |||| ||||| | |
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| T |
26045 |
cataccaggaaactgacagcagaacctaatccaacacttaagaatcgacccaaataagaatctgcaataaaagcaccaaccacaggcatgaacttgctgg |
26144 |
T |
|
| Q |
123 |
ctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaatacaatatcatgtt |
201 |
Q |
| |
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|||||| |||| || |||||||| ||| | |||||| ||||| |||| | |||||| ||||||||||||||||| |
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| T |
26145 |
ctgcagcaaataagaggagtatctggttagcttggccaagatgaaggttgtaaggtcccatcaaatacaatatcatgtt |
26223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 25272186 - 25272008
Alignment:
| Q |
23 |
cataccaggaaactgatagaagaacctattccaacacctaggaatcgacccagaaaagaatctgcaataaaagcaccaatcacaggtgtgaaattgctag |
122 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||||| || ||||| ||||| | |||||||||||| ||||||||||| |||||| |||| |||| | |
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| T |
25272186 |
cataccaggaaactgacagcagaacctaatccaacacttaagaatctacccaaataagaatctgcaacaaaagcaccaaccacaggcatgaacttgccgg |
25272087 |
T |
|
| Q |
123 |
ctgcagaggataaaagaagtatctgagtagatatgccaaggtgaagtctgtatgatcccattaaatacaatatcatgtt |
201 |
Q |
| |
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|||||| ||||| || |||||||| ||| | |||||| ||||| |||| | |||||| ||||||||||||||||| |
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| T |
25272086 |
ctgcagcagataagaggagtatctggttagcttggccaagatgaaggttgtaaggtcccatcaaatacaatatcatgtt |
25272008 |
T |
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