View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_high_26 (Length: 356)
Name: NF1758_high_26
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 24 - 347
Target Start/End: Original strand, 53603542 - 53603867
Alignment:
| Q |
24 |
gttttgtcttgtcaaatctacaatttgtttgagtttattgtaaa-tattaattatcaaacattgttgatcacagctttttcttatgcctatttttgctcc |
122 |
Q |
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| T |
53603542 |
gttttgtcttgtcaaatctacaatttgtttgagtttattgtaaaatattaat-atcaaacattgttgatcacagctttttcttatgcctatttttgctcc |
53603640 |
T |
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| Q |
123 |
tactttgggcgaggcaaggcttctatcgattggactcttttttcactgtgtacatgtaagcatttatccctttgtaattttataagt--nnnnnnnnnta |
220 |
Q |
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| T |
53603641 |
tactttgggcgaggcaaggcttctatcgattggactcttttttcactgtgtacatgtaagcatttatccttttgtaattttataagtaaaaaaaaaaata |
53603740 |
T |
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| Q |
221 |
cacatttttgtaaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctatt |
320 |
Q |
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| T |
53603741 |
cacatttttgtaaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctatt |
53603840 |
T |
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| Q |
321 |
gctaattacaatttacaagttcatctc |
347 |
Q |
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| T |
53603841 |
gctaattacaatttacaagttcatctc |
53603867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 39170622 - 39170530
Alignment:
| Q |
232 |
aaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgctactctattgcta |
324 |
Q |
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||||| |||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
39170622 |
aaattataaattagtgttatcaaattgaatgtagatgttcatttacagtatagcatggtcctcttgggtatgtctttagctactctattgcta |
39170530 |
T |
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