View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_high_27 (Length: 349)
Name: NF1758_high_27
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 5379691 - 5379360
Alignment:
| Q |
1 |
aaaatttgaataaaaatgctttggaattgaccaaataaaaaggccatgagagaaaaataatgaaaacctaattataaatgcctcgttcaccaagcattat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5379691 |
aaaatttgaataaaaatgctttggaattgaccaaataaaaaggccatgagagaaaaataatgaaaacctaattataaatgcctcgtttaccaagcattat |
5379592 |
T |
|
| Q |
101 |
tgttgtgaccattcgccaacgcaaaagtcccaaaacgcgaccaatcgtccacttccattatggcgtccactgttctaccccaaccactgaatactacgtc |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
5379591 |
tgttgtgaccattagccaacgcaaaagtcccaaaacgcgaccaatcgtccatttccattatggcgtccactgttctaccccaaccactgaatgctatgtc |
5379492 |
T |
|
| Q |
201 |
ctttgcattaaaatgtcatttacaggctccctatattatcctccattcatctttgatagtgaggtatacgtcaaccacgaataacgtacccctcccttcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5379491 |
ctttgcattaaaatgtcatttacaggctccctatatcatcctccattcatctttgatagtgaggtatacgtcaaccacgaataacgtacccctcccttcc |
5379392 |
T |
|
| Q |
301 |
ctaattgacgaccattttataaaagaaataaa |
332 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |
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| T |
5379391 |
ctgattgacgaccattttataaaagaaataaa |
5379360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 2 - 332
Target Start/End: Complemental strand, 19002338 - 19002008
Alignment:
| Q |
2 |
aaatttgaataaaaatgctttggaattgaccaaataaaaaggccatgagagaaaaataatgaaaacctaattataaatgcctcgttcaccaagcattatt |
101 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19002338 |
aaatttgaataaaaatgctttggaattgaccaaataaaaagaccaagagagataaataatgaaaacctaattataaatgcctcgttcaccaagcattatt |
19002239 |
T |
|
| Q |
102 |
gttgtgaccattcgccaacgcaaaagtcccaaaacgcgaccaatcgtccacttccattatggcgtccactgttctaccccaaccactgaatactacgtcc |
201 |
Q |
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|
|||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
19002238 |
gttgtgaccattagccaacgcaaaagtcgcaaaatgcgaccgatcgtccacttccattgtggcgtccactgttctaccccaaccactgaatgctatgtcc |
19002139 |
T |
|
| Q |
202 |
tttgcattaaaatgtcatttacaggctccctatattatcctccattcatctttgatagtgaggtatacgtcaaccacgaataacgtacccctcccttccc |
301 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| |
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| T |
19002138 |
tttgcattaaaatgtcatttacaggctccctatatcatcctctgttcatctttgatagtgaggtatacgtcaaccgcgaataatgtacgcctcccttccc |
19002039 |
T |
|
| Q |
302 |
taattgacgaccattttataaaagaaataaa |
332 |
Q |
| |
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| ||||||||||||||||||||||||||||| |
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|
| T |
19002038 |
tgattgacgaccattttataaaagaaataaa |
19002008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22680518 - 22680433
Alignment:
| Q |
1 |
aaaatttgaataaaaatgctttggaattgaccaaataaaaaggccatgagaga-aaaataatgaaaacctaattataaatgcctcg |
85 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||| ||||||| ||| |||| | |||| ||||||||||||||| ||||||||||| |
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|
| T |
22680518 |
aaaatttaaataaaaattctttggaattgaacaactaaaaagaccaagagaaagaaaagaatgaaaacctaattgtaaatgcctcg |
22680433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 23220708 - 23220376
Alignment:
| Q |
1 |
aaaatttgaataaaaatgctttggaattgaccaaataaaaaggccatgagagaaaaataatgaaaacctaattataaatgcctcgttcaccaagcattat |
100 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||| ||||||| ||| |||| ||||| |||||||||||||| |||||||||||||||||||||||| | |
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| T |
23220708 |
aaaatttaaataaaaattctttggaattgaacaactaaaaagaccaagagaaaaaaaggatgaaaacctaattgtaaatgcctcgttcaccaagcattct |
23220609 |
T |
|
| Q |
101 |
tgttgtgaccattcgccaacgcaaaagtcccaaaacgcgaccaatcgtccacttccattatggcgtccactgttctaccccaaccactgaatactacgtc |
200 |
Q |
| |
|
||| |||| ||| ||||||| | ||||| ||||| || ||||| ||||||||||||| ||| || |||||||||||| ||||||||| ||| || |
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|
| T |
23220608 |
tgtcgtgatcatgagccaacgtagaagtcacaaaatgcatccaattgtccacttccattgtggggtttgatgttctaccccagccactgaatgctatgtt |
23220509 |
T |
|
| Q |
201 |
ctttgcattaaaatgtcatttacaggctccctatattatcctccattcatctttgatagtgaggtatacgtcaaccacgaataacgtacccc-tcccttc |
299 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||| || ||| |||||||| ||||||| ||||||| ||||||| |
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|
| T |
23220508 |
tttagcattaaaatgtcatttataggctccctatatcatcctccgttcatcattgatagttagatattcgtcaaccgcgaataatgtaccccttcccttc |
23220409 |
T |
|
| Q |
300 |
cctaattgacgaccattttataaaagaaataaa |
332 |
Q |
| |
|
||| |||||| ||||||||| | |||||||||| |
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|
| T |
23220408 |
cctgattgaccaccattttacagaagaaataaa |
23220376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 22644181 - 22644266
Alignment:
| Q |
1 |
aaaatttgaataaaaatgctttggaattgaccaaataaaaaggccatgagaga-aaaataatgaaaacctaattataaatgcctcg |
85 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||| ||||||| ||| |||| | |||| ||||||||||||||| ||||||||||| |
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| T |
22644181 |
aaaatttaaataaaaatactttggaattgaacaactaaaaagaccaagagaaagaaaagaatgaaaacctaattgtaaatgcctcg |
22644266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 27032242 - 27032157
Alignment:
| Q |
1 |
aaaatttgaataaaaatgctttggaattgaccaaataaaaaggccatgagaga-aaaataatgaaaacctaattataaatgcctcg |
85 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||| ||||||| ||| |||| | |||| ||||||||||||||| ||||||||||| |
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|
| T |
27032242 |
aaaatttaaataaaaatgctttagaattgaacaactaaaaagaccaagagaaagaaaagaatgaaaacctaattgtaaatgcctcg |
27032157 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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