View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1758_high_33 (Length: 300)

Name: NF1758_high_33
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1758_high_33
NF1758_high_33
[»] chr5 (10 HSPs)
chr5 (197-295)||(39310823-39310921)
chr5 (197-289)||(38749919-38750011)
chr5 (115-175)||(38848805-38848865)
chr5 (115-175)||(39310537-39310597)
chr5 (197-294)||(38849091-38849188)
chr5 (117-171)||(38750241-38750295)
chr5 (116-175)||(38807565-38807624)
chr5 (126-175)||(38865802-38865851)
chr5 (204-239)||(38868048-38868083)
chr5 (50-78)||(39310332-39310360)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 295
Target Start/End: Original strand, 39310823 - 39310921
Alignment:
Q  197 gaagattataaaccattgcatattctatgttttaaaagatgtggaagatttaattgctcagatatataatggtcttgagttggaaacattcatctcact 295  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||||| ||||||||||||||||||||||||| |||||    
T  39310823 gaagtttataaaccattgcatattctatgttttaaacgatgtgggacattttattgctcagatatattatggtcttgagttggaaacattcatgtcact 39310921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 197 - 289
Target Start/End: Complemental strand, 38750011 - 38749919
Alignment:
Q  197 gaagattataaaccattgcatattctatgttttaaaagatgtggaagatttaattgctcagatatataatggtcttgagttggaaacattcat 289  Q
    |||| |||||||||||| ||||||||||||| |||| ||||||| | |||| ||||||||||||||| |||||||||||||||||| ||||||    
T  38750011 gaaggttataaaccatttcatattctatgttctaaacgatgtgggacattttattgctcagatatattatggtcttgagttggaaagattcat 38749919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 38848805 - 38848865
Alignment:
Q  115 catatgggctgagaatacagcagcttgtgatccctccactgtcgagagaaggaagtgttca 175  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  38848805 catacgggctgagaatacagcagcctgtgatccctccactgtcaagagaaggaagtgttca 38848865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 39310537 - 39310597
Alignment:
Q  115 catatgggctgagaatacagcagcttgtgatccctccactgtcgagagaaggaagtgttca 175  Q
    |||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  39310537 catatgggctgagaatactgcagcctgtgatccctccactgtcaagagaaggaagtgttca 39310597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 38849091 - 38849188
Alignment:
Q  197 gaagattataaaccattgcatattctatgttttaaaagatgtggaagatttaattgctcagatatataatggtcttgagttggaaacattcatctcac 294  Q
    |||| ||||||||| || ||||| || |||| |||| ||||||| | |||| ||||||||||||||| |||||||||||||| |||||||||| ||||    
T  38849091 gaagcttataaaccgtttcatatgctttgttctaaacgatgtgggacattttattgctcagatatattatggtcttgagttgtaaacattcatgtcac 38849188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 38750295 - 38750241
Alignment:
Q  117 tatgggctgagaatacagcagcttgtgatccctccactgtcgagagaaggaagtg 171  Q
    |||||||||||||||||||||| ||| |||||||||||||| |||||||||||||    
T  38750295 tatgggctgagaatacagcagcctgtaatccctccactgtcaagagaaggaagtg 38750241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 38807624 - 38807565
Alignment:
Q  116 atatgggctgagaatacagcagcttgtgatccctccactgtcgagagaaggaagtgttca 175  Q
    |||||| | |||||| ||||||| ||| ||||||||||||||||||||||||||||||||    
T  38807624 atatggaccgagaatgcagcagcctgtaatccctccactgtcgagagaaggaagtgttca 38807565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 38865802 - 38865851
Alignment:
Q  126 agaatacagcagcttgtgatccctccactgtcgagagaaggaagtgttca 175  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||||||||    
T  38865802 agaatactgcagcctgtgatccctccactgtcaagagaaggaagtgttca 38865851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 38868048 - 38868083
Alignment:
Q  204 ataaaccattgcatattctatgttttaaaagatgtg 239  Q
    ||||||||||||||||||||||||||||| ||||||    
T  38868048 ataaaccattgcatattctatgttttaaacgatgtg 38868083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 78
Target Start/End: Original strand, 39310332 - 39310360
Alignment:
Q  50 tcaactgacaaataatatttacctaggta 78  Q
    |||||||||||||||||||||||||||||    
T  39310332 tcaactgacaaataatatttacctaggta 39310360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University