View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1758_high_34 (Length: 297)
Name: NF1758_high_34
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_34 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 11727943 - 11727663
Alignment:
| Q |
1 |
atagatagatagatagatggataataatagatgtgaatattacaagctattttataatagaaattctaagcaaactaacccggcaaacgatcattttagc |
100 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11727943 |
atagatagacagacagatggataataatagatgtgaatattacaagctattttataacagaaattctaagcaaactgacccggcaaacgatcattttagc |
11727844 |
T |
|
| Q |
101 |
ccacttcttcgtacgctgatcaagaaataggttcatcttaatctcatataaataagataagagcataaacaaagcgtgtctttgaaagtataaaaaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
11727843 |
ccacttcttcgtacgctgatcaagaaataggttcatcttaatctgatataaataagacaagagcataaaaaaagtgtgtctttgaaagtataaaaaatat |
11727744 |
T |
|
| Q |
201 |
aaagttaaaggcttcgtcgaggaattttcacgaatatggtgatggttagaagtgtcactaaaagtgtgtggaattgcttaa |
281 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
11727743 |
aaagttaacggcttcatcgaggaattttcacgattatggtgatggttagaagtgtcactaatagtgtgtcgaattgcttaa |
11727663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 11719595 - 11719533
Alignment:
| Q |
26 |
aatagatgtgaatattacaagctattttataatagaaattctaagcaaactaacccggcaaac |
88 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
11719595 |
aataaatgtgaatattacaagcaattttataacagaaatgctaaaaaaactaacccggcaaac |
11719533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University