View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_high_39 (Length: 264)
Name: NF1758_high_39
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 34 - 246
Target Start/End: Original strand, 40440261 - 40440473
Alignment:
| Q |
34 |
ggtgtgtctggttatacaaatgtgagcaattcttccccttgaacgagatccctcaagaacctagggtttgcctagcatcgattcactttgatggtcttgc |
133 |
Q |
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| T |
40440261 |
ggtgtgtctggttatacaaatgtgagcaattcttccccttggacgagatccctcaataacctagggttcgcctagcatcgattcactttgatggtcttgc |
40440360 |
T |
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| Q |
134 |
ccttcaatgacacttaaactacatgctggcaagatacaaatactcctccatggcaaaagtacgctgatgaagaccccctggctactttgattcacgtc-- |
231 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
40440361 |
ccttcaatgacacttaaactacatgcgggcaagatac-gatactcctccatggcaagagtatgctgatgaaga-cccctggctactttgattcacgtcaa |
40440458 |
T |
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| Q |
232 |
caacaaggtgggaag |
246 |
Q |
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||||||||||||||| |
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| T |
40440459 |
caacaaggtgggaag |
40440473 |
T |
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