View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1758_high_4 (Length: 534)
Name: NF1758_high_4
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 534
Target Start/End: Original strand, 1324748 - 1325260
Alignment:
| Q |
20 |
ggtttacggtttttgaaatttacccttcaccttttcttactttgtaccattatttaatttgtgcctctgacagacatatctattatatatatat----gt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1324748 |
ggtttacggtttttgaaatttacccttcaccttttcttactttgtaccattatttaatttgtgcctctgacagacatatctattatatatatatatatgt |
1324847 |
T |
|
| Q |
116 |
gtgtgtgctgagtgatagcagatgtaccatattgtattgttgtacttgtaattagtgatggctcggtttgnnnnnnngtctctcttattcttattcttat |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1324848 |
gtgtgtgttgagtgatagcagatgtaccatattgtattgttgtacttgtaattagtgatggctcggtttgtttttttgtctctcttattcttattcttat |
1324947 |
T |
|
| Q |
216 |
tcttaattgatggttctaagagtgagcttcatgttggtttctactccaacacatgtcctcaagtagagtccactgtccatgatgttgttagagaagctgt |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1324948 |
tcttaattgatggttctaagagtcagcttcatgttggtttctactccaacacatgtcctcaagtagagtccactgtccatgatgttgttagagaagctgt |
1325047 |
T |
|
| Q |
316 |
tctttttgacagaaccaaggctgctgttcttctcaggcttcattttcatgactgctttgttgaggtctttcnnnnnnnnnnnnnnnnnnngtctcgtgtt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1325048 |
tctttttgacagaaccaaggctgctgttcttctcaggcttcattttcatgactgctttgttgaggtctttc------tatctatatatatgtctcgtgtt |
1325141 |
T |
|
| Q |
416 |
ttaatatgttttggttctaacattttgtgacacgattttgatggggtttttcagggatgtgatggttcaatactgattaatactactcaaaatccagaga |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1325142 |
ttaatatgttttggttctaacattttgtgacatgattttgatggagtttttcagggatgtgatggttcaatactgattaatactactcaaaatccagaga |
1325241 |
T |
|
| Q |
516 |
agaatgcagatccacatgc |
534 |
Q |
| |
|
||| |||| ||||||||| |
|
|
| T |
1325242 |
agactgcatttccacatgc |
1325260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University