View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1758_high_42 (Length: 262)

Name: NF1758_high_42
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1758_high_42
NF1758_high_42
[»] chr7 (1 HSPs)
chr7 (1-244)||(5379813-5380056)
[»] chr6 (2 HSPs)
chr6 (9-244)||(19002469-19002704)
chr6 (25-244)||(22680671-22680890)
[»] chr1 (3 HSPs)
chr1 (1-244)||(22040107-22040330)
chr1 (149-230)||(22045797-22045878)
chr1 (154-230)||(22033440-22033516)
[»] chr8 (1 HSPs)
chr8 (25-244)||(22643809-22644028)
[»] chr5 (2 HSPs)
chr5 (25-244)||(27032395-27032614)
chr5 (158-235)||(18535631-18535708)
[»] chr3 (2 HSPs)
chr3 (26-244)||(23220862-23221083)
chr3 (120-183)||(23218324-23218387)
[»] scaffold0422 (1 HSPs)
scaffold0422 (120-233)||(10204-10318)
[»] chr2 (1 HSPs)
chr2 (120-233)||(29406503-29406617)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5379813 - 5380056
Alignment:
Q  1 ttgaacccatccagacatcaatacaagtgttgaggatcttttgtttttgcctttttattagtttaacggggacaacggtaaaaacctgatttaacgagga 100  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||| |||||||||||||     
T  5379813 ttgaaaccatccagacatcataacaagtgttgaggatcttttgtttttgccattttattggtttaacggggacaaaggtcaaaacttgatttaacgaggg 5379912  T
Q  101 atgaaaatatcggtatcagtcaaaattcattagtgaattgcgacaacatattgaaagtggacatgtataatcttacattttttaacaagttcgatttttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5379913 atgaaaatatcggtatcagtcaaaattcattagtgaattgcgacaacatattgaaagtggacatgtataatcttacattttttaacaagttcgatttttt 5380012  T
Q  201 atatcaattacatgtatgatatttcttttaattatgataatttt 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5380013 atatcaattacatgtatgatatttcttttaattatgataatttt 5380056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 19002469 - 19002704
Alignment:
Q  9 atccagacatcaatacaagtgttgaggatcttttgtttttgcctttttattagtttaacggggacaacggtaaaaacctgatttaacgaggaatgaaaat 108  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | | ||||| ||||||||||||| ||||||||    
T  19002469 atccagacatcataacaagtgttgaggatcttttgcttttgcctttttattggtttaacggggacaaagctcaaaacttgatttaacgagggatgaaaat 19002568  T
Q  109 atcggtatcagtcaaaattcattagtgaattgcgacaacatattgaaagtggacatgtataatcttacattttttaacaagttcgattttttatatcaat 208  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19002569 atcggtatcaatcaaaattcattagtgaattgcgacaacatattgaaagtggacatgtataatcttacattttttaacaagtttgattttttatatcaat 19002668  T
Q  209 tacatgtatgatatttcttttaattatgataatttt 244  Q
    ||||||| ||||||||||||||||| ||||||||||    
T  19002669 tacatgtgtgatatttcttttaattgtgataatttt 19002704  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 22680671 - 22680890
Alignment:
Q  25 aagtgttgaggatcttttgtttttgcctttttattagtttaacggggacaacggtaaaaacctgatttaacgaggaatgaaaatatcggtatcagtcaaa 124  Q
    ||||||||| ||||||||| | ||||||||||||   ||| | | |||||| | | ||||| ||||| ||||| | ||||||| |||||||| | |||||    
T  22680671 aagtgttgatgatcttttgctattgcctttttatcgatttgaagaggacaaagttcaaaacttgattcaacgatggatgaaaacatcggtattaatcaaa 22680770  T
Q  125 attcattagtgaattgcgacaacatattgaaagtggacatgtataatcttacattttttaacaagttcgattttttatatcaattacatgtatgatattt 224  Q
    ||||||||||| ||| ||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22680771 attcattagtggattacgacaacctaatgaaagtggacatgcatcatcttacattttttaacaagttcgattttttatatcaattacatgtatgatcttt 22680870  T
Q  225 cttttaattatgataatttt 244  Q
    ||||||| | |||| |||||    
T  22680871 cttttaactctgatgatttt 22680890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 22040330 - 22040107
Alignment:
Q  1 ttgaacccatccagacatcaatacaagtgttgaggatcttttgtttttgcctttttattagtttaacggggacaacggtaaaaacctgatttaacgagga 100  Q
    ||||| ||||||||||||||  ||||||||||||||||||||| ||||||||||||||| ||||||||||                   ||||||||||     
T  22040330 ttgaaaccatccagacatcataacaagtgttgaggatcttttgcttttgcctttttattggtttaacggg-------------------tttaacgaggg 22040250  T
Q  101 atgaaaatatcggtatcagtcaaaattcattagtgaattgcgacaacatattgaaagtggacatgtataatcttacattttttaacaagttcgatttttt 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||    
T  22040249 atgaaaatatcggtatcaatcaaaattcattagtgaattgcgacaacatattgaaagtggacttgtat-atcttacattttttaacaatttcgatttttt 22040151  T
Q  201 atatcaattacatgtatgatatttcttttaattatgataatttt 244  Q
    ||||||||||||||| |||||||||||||||||||||| |||||    
T  22040150 atatcaattacatgtgtgatatttcttttaattatgatgatttt 22040107  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 22045878 - 22045797
Alignment:
Q  149 tattgaaagtggacatgtataatcttacattttttaacaagttcgattttttatatcaattacatgtatgatatttctttta 230  Q
    |||| ||||| |||||||||  |||||| |||| || ||||||| | |||||||||||| |  |||||||||||||||||||    
T  22045878 tattaaaagtagacatgtatcgtcttaccttttgtatcaagttcaactttttatatcaactgaatgtatgatatttctttta 22045797  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 22033516 - 22033440
Alignment:
Q  154 aaagtggacatgtataatcttacattttttaacaagttcgattttttatatcaattacatgtatgatatttctttta 230  Q
    ||||| || ||||||  |||||| |||| || ||||||| | |||||||||||| |  |||||||||||||||||||    
T  22033516 aaagtagatatgtatcgtcttaccttttatatcaagttcaactttttatatcaactgaatgtatgatatttctttta 22033440  T

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Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 22644028 - 22643809
Alignment:
Q  25 aagtgttgaggatcttttgtttttgcctttttattagtttaacggggacaacggtaaaaacctgatttaacgaggaatgaaaatatcggtatcagtcaaa 124  Q
    ||||||||| ||||||||| | ||||||||||||   ||| | | |||||| | | ||||| ||||| ||||| | ||||||| |||||||| | |||||    
T  22644028 aagtgttgatgatcttttgctattgcctttttatcgatttgaagaggacaaagttcaaaacttgattcaacgatggatgaaaacatcggtattaatcaaa 22643929  T
Q  125 attcattagtgaattgcgacaacatattgaaagtggacatgtataatcttacattttttaacaagttcgattttttatatcaattacatgtatgatattt 224  Q
    ||||||||||| ||| ||||||| || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22643928 attcattagtggattacgacaacctaatgaaagtggacatgcatcatcttacattttttaacaagttcgattttttatatcaattacatgtatgatcttt 22643829  T
Q  225 cttttaattatgataatttt 244  Q
    ||||||| | |||| |||||    
T  22643828 cttttaactctgatgatttt 22643809  T

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Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 244
Target Start/End: Original strand, 27032395 - 27032614
Alignment:
Q  25 aagtgttgaggatcttttgtttttgcctttttattagtttaacggggacaacggtaaaaacctgatttaacgaggaatgaaaatatcggtatcagtcaaa 124  Q
    ||||||||| ||||||||| | ||||||||||||   ||| | | |||||| | | ||||| ||||| ||||| | ||||||| |||||||| | |||||    
T  27032395 aagtgttgatgatcttttgctattgcctttttatcgatttgaagaggacaaagttcaaaacttgattcaacgatggatgaaaacatcggtattaatcaaa 27032494  T
Q  125 attcattagtgaattgcgacaacatattgaaagtggacatgtataatcttacattttttaacaagttcgattttttatatcaattacatgtatgatattt 224  Q
    ||||||||||| ||| ||||||| || |||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  27032495 attcattagtggattacgacaacctaatgaaagtggacatgcatcatcttacgttttttaacaagttcgattttttatatcaattacatgtatgatcttt 27032594  T
Q  225 cttttaattatgataatttt 244  Q
    ||||||| | |||| |||||    
T  27032595 cttttaactctgatgatttt 27032614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 18535631 - 18535708
Alignment:
Q  158 tggacatgtataatcttacattttttaacaagttcgattttttatatcaattacatgtatgatatttcttttaattat 235  Q
    ||||||||||| ||||||| ||||||| ||||||| ||||||||||| || || ||||| ||| || |||||||||||    
T  18535631 tggacatgtatcatcttactttttttatcaagttcaattttttatattaagtagatgtacgatcttccttttaattat 18535708  T

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Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 244
Target Start/End: Original strand, 23220862 - 23221083
Alignment:
Q  26 agtgttgaggatcttttgtttttgcctttttattagtttaacggggacaacggtaaaaacctgatttaacgaggaatgaaaatatcggtatcagtcaaaa 125  Q
    |||| ||| ||||||||| | |||||||||||| | ||| ||| |||||| ||| ||||| ||||| ||||||| ||||||| ||||  || | ||||||    
T  23220862 agtgctgatgatcttttgctattgcctttttatcaatttgacgaggacaaaggtcaaaacttgattcaacgagggatgaaaacatcgacattaatcaaaa 23220961  T
Q  126 ttcattagtgaattgcgacaacatattgaaagtggacatgtataatcttacattttttaacaagttcga-ttttttatatcaatt--acatgtatgatat 222  Q
    |||||||||| ||| | | ||| || |||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||  |||||||||||||    
T  23220962 ttcattagtggattacaataacctaatgaatgtggacatgtatcatcttacattttttaacaagttcgatttttttatatcaattacacatgtatgatat 23221061  T
Q  223 ttcttttaattatgataatttt 244  Q
    ||||||||||| ||||| ||||    
T  23221062 ttcttttaattctgatagtttt 23221083  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 23218387 - 23218324
Alignment:
Q  120 tcaaaattcattagtgaattgcgacaacatattgaaagtggacatgtataatcttacatttttt 183  Q
    |||||||||| ||||||||| | ||||| ||||||||||| |||||||||||||||| ||||||    
T  23218387 tcaaaattcaatagtgaattactacaacgtattgaaagtgaacatgtataatcttacgtttttt 23218324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0422 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 233
Target Start/End: Original strand, 10204 - 10318
Alignment:
Q  120 tcaaaattcattagtgaattgcgacaa-catattgaaagtggacatgtataatcttacattttttaacaagttcgattttttatatcaattacatgtatg 218  Q
    |||||||||||||| ||||| | |||| | |||||||||| ||||||||| ||||||| |||| || ||||||||| ||||||||| || || |||||||    
T  10204 tcaaaattcattagcgaattactacaaacgtattgaaagtagacatgtatcatcttaccttttgtatcaagttcgaatttttatataaactaaatgtatg 10303  T
Q  219 atatttcttttaatt 233  Q
    |||||||||||||||    
T  10304 atatttcttttaatt 10318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 233
Target Start/End: Original strand, 29406503 - 29406617
Alignment:
Q  120 tcaaaattcattagtgaattgcgacaa-catattgaaagtggacatgtataatcttacattttttaacaagttcgattttttatatcaattacatgtatg 218  Q
    |||||||||||||| | ||| | |||| | |||||||||| ||||||||| ||||||| |||| || |||||| || |||||||||||| || | |||||    
T  29406503 tcaaaattcattagcggattactacaaacgtattgaaagtagacatgtatcatcttaccttttgtatcaagtttgaatttttatatcaactaaacgtatg 29406602  T
Q  219 atatttcttttaatt 233  Q
    || ||||||||||||    
T  29406603 atttttcttttaatt 29406617  T

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