View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_high_43 (Length: 256)
Name: NF1758_high_43
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 35182735 - 35182503
Alignment:
| Q |
1 |
agtgtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcgagtgctgctg |
100 |
Q |
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| T |
35182735 |
agtgtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcgagtgctgctg |
35182636 |
T |
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| Q |
101 |
gagcctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcgggaagaggacg |
200 |
Q |
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| T |
35182635 |
gagcctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcgggaagaggacg |
35182536 |
T |
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| Q |
201 |
aaggctaagataccagattgttcctcgctcccg |
233 |
Q |
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| T |
35182535 |
aaggctaagataccagattgttcctcgctcccg |
35182503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 35178763 - 35178533
Alignment:
| Q |
4 |
gtgtgttggtttgaaatcaggggctggatcagcactatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcgagtgctgctggag |
103 |
Q |
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||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35178763 |
gtgtgttggttcgaaatccggggctggatcaacacgatcatgttatctccaaagactttgtacggagcataccttgtatttaagtcgagtgcttctggaa |
35178664 |
T |
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| Q |
104 |
cctttggatttgaatatcagccatgtgaagcctccattgacattgctggaggcgatactgtggagcgaaatgtattcttggatgcgggaagaggacgaag |
203 |
Q |
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||| ||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
35178663 |
cctatggatttgagtatcagccatgtgaagcctccattgtcattgctggaggtgatactgtggagcgaaatgtattcttggatgtggaaagaggacgaag |
35178564 |
T |
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| Q |
204 |
gctaagataccagattgttcctcgctcccgt |
234 |
Q |
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| T |
35178563 |
gctaagataccagattgttcatcgcttccgt |
35178533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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