View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_high_46 (Length: 247)
Name: NF1758_high_46
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_high_46 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 40504485 - 40504245
Alignment:
| Q |
7 |
gagaagaattttgccttcaataactttaccttcttcaatcaattcagtagggtgagaaaggggttattgatgctcgcgattctctatctctctttgtatc |
106 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40504485 |
gagaagaattttgcattcaatcactttaccttcttcaatcaattcagtagggtgagaaaggggttattgatgctcgcgactctctatctctctttgtatc |
40504386 |
T |
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| Q |
107 |
acgtctcgttcgctctcgacggcctccaaactccctgttcttctccaattctccgttttcgattcttgtcagttctgtcaccttcttcagcgctaactcc |
206 |
Q |
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|||||||||||||||||||| |||| ||||||| | |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40504385 |
acgtctcgttcgctctcgacagccttcaaactcaccgttcttctccaattctccattttcgattcttgtaagttctgtcaccttcttcagcgctaactcc |
40504286 |
T |
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| Q |
207 |
tgattcatattccatacataaggttattagggtttatattt |
247 |
Q |
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| T |
40504285 |
tgattcatattccatacataaggttattagggtttatattt |
40504245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 15345466 - 15345226
Alignment:
| Q |
7 |
gagaagaattttgccttcaataactttaccttcttcaatcaattcagtagggtgagaaaggggttattgatgctcgcgattctctatctctctttgtatc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15345466 |
gagaagaattttgccttcaataactttaccttcttcaatcaattcagtagggggagaaaggggttattgatgctcgcgattctctatctctctttgtatc |
15345367 |
T |
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| Q |
107 |
acgtctcgttcgctctcgacggcctccaaactccctgttcttctccaattctccgttttcgattcttgtcagttctgtcaccttcttcagcgctaactcc |
206 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |
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| T |
15345366 |
acgtcacgttcgctctcgacggcctccaaactctatgttcttctccaattctccgttttcaattcttgtaagttctgttaccttcttcagcgctaactcc |
15345267 |
T |
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| Q |
207 |
tgattcatattccatacataaggttattagggtttatattt |
247 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||| |
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| T |
15345266 |
tgattcatgttccatacataaggtttttagggtttatattt |
15345226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 24706006 - 24706246
Alignment:
| Q |
7 |
gagaagaattttgccttcaataactttaccttcttcaatcaattcagtagggtgagaaaggggttattgatgctcgcgattctctatctctctttgtatc |
106 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
24706006 |
gagaagaattttgccatcaatcactttaccttcttcaatcaattcagtagggtgaaaaaggggttattgatgctcgcgactctctatctctctttgtctc |
24706105 |
T |
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| Q |
107 |
acgtctcgttcgctctcgacggcctccaaactccctgttcttctccaattctccgttttcgattcttgtcagttctgtcaccttcttcagcgctaactcc |
206 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
24706106 |
acgtctcgttcgctctcgacggccttcaaactctctgttcttctccaattctctgttttcgattcttgtaagttttgtcaccttcttcagcgctaactcc |
24706205 |
T |
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| Q |
207 |
tgattcatattccatacataaggttattagggtttatattt |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
24706206 |
tgattcatattccatacataaggttattagggtttatattt |
24706246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 22107730 - 22107961
Alignment:
| Q |
7 |
gagaagaattttgccttcaataactttaccttcttcaatcaattcagtagggtgagaaaggggttattgatgctcgcgattctctatctctctttgtatc |
106 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |
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| T |
22107730 |
gagaagaatttcgccttcaatcactttaccttcttcaatcaattcagtagggtgagaaaggggttattgatgctc---------tatctctttttgtctc |
22107820 |
T |
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| Q |
107 |
acgtctcgttcgctctcgacggcctccaaactccctgttcttctccaattctccgttttcgattcttgtcagttctgtcaccttcttcagcgctaactcc |
206 |
Q |
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|||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |
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| T |
22107821 |
acgtctcgttcgctctcgtcggccttcaaactctttgttcttctccaattctccgttttcgattcttgtaagttatgtcaccttcttcaacgctaactcc |
22107920 |
T |
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| Q |
207 |
tgattcatattccatacataaggttattagggtttatattt |
247 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |
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| T |
22107921 |
tgattcatattccatacaaaaggttattagggtttatattt |
22107961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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