View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1758_low_10 (Length: 459)
Name: NF1758_low_10
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 10 - 441
Target Start/End: Complemental strand, 39652260 - 39651829
Alignment:
| Q |
10 |
aagaatatcaggcctttcagcagattttagagaatgaactgtcctcactaaattctatagtaaataatcaggtctctaggtcaaccgaaacaaatccact |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39652260 |
aagaaaatcaggcctttcagcagattttagagaatgaactgtcgtcactaaattctatagtaaataatcaggtctctaggtcaaccgaaacaaatccact |
39652161 |
T |
|
| Q |
110 |
tgccggaaatcccttgcctcaatatcaggcctctcggccgattacaatggatgcaatgaatgcattgtcctcactgcgttctagaatacagaatcagata |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39652160 |
tgccggaaatcccttgcctcaatatcaggcctctcagccgattacaatggatgcaatgaatgcattgtcctcactgcgttctagaatacagaatcagata |
39652061 |
T |
|
| Q |
210 |
tccacgcaaaataatgtccctgcattcgccttgcaaaataatgcctctggattcaccacagcttccacaatactgaatggcataaacaatggtatatctc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39652060 |
tccacgcaaaataatgtccctgcattcgccttgcaaaataatgcctctggattcaccacagcttccacaatactgaatggcataaacaatggtatatctc |
39651961 |
T |
|
| Q |
310 |
aagaatcattatctacgttggcaacaaattatggatatccttttcacaccgttccaagtacgtctctaggtgtacaaaaccatgccatccaaaagaagcg |
409 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39651960 |
aagaatcaggatctacgttggcaacaaattatggatatccttttcacaccgttccaagtacgtctctaggtgtacaaaaccatgccatccaaaagaagcg |
39651861 |
T |
|
| Q |
410 |
aggacgcaaagttcacagttttggaacgatgt |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39651860 |
aggacgcaaagttcacagttttggaacgatgt |
39651829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 414
Target Start/End: Complemental strand, 39672174 - 39672133
Alignment:
| Q |
373 |
ctctaggtgtacaaaaccatgccatccaaaagaagcgaggac |
414 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39672174 |
ctctaggtgtacgaaaccatgccatccaaaagaagcgaggac |
39672133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University