View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_12 (Length: 448)
Name: NF1758_low_12
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 39 - 378
Target Start/End: Original strand, 28649218 - 28649557
Alignment:
| Q |
39 |
attttccgcactttttcttatttgatatttcaagcaaacaaaaataacatatagtttatgcctgttgagtatggctcataggcagtgtcaagggggcaag |
138 |
Q |
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| T |
28649218 |
attttccacactttttcttatttggtctttcaagcaaacaaaaataacatatagtttatgcttgttgagtatggctcataggcagtgtcaaggggacaag |
28649317 |
T |
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| Q |
139 |
gggagaggtagaagagcgagcatagcgagtatcccccgtgtgtttaatcctattctttgttgtagggaacagattggggggtg-tcagggctcgcattac |
237 |
Q |
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| T |
28649318 |
gg-agaggtagaagagcgagcgtagcgagtatcccccgtgcgtttaatcctattgtttgttgtagggaacagattgggggggggtcagggcgcgcactac |
28649416 |
T |
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| Q |
238 |
gattaagggttattgttgtaatcagtaaattgacgtataaagcttgtaacattgtaaaccctaactttgtcaatcgaaatattctagaactacaaccgct |
337 |
Q |
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| T |
28649417 |
gattaagggttattgttgtaatcaataaattgacgtataaagcttgtaacattgtaaaccctaactttgtcaatcgaaatattctagaactacaaccgct |
28649516 |
T |
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| Q |
338 |
ttttagttgtagacatgtttattgtgttgcaaattatcgtt |
378 |
Q |
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| T |
28649517 |
ttttagttgtagacatgtttattgtgttgcaaattatcgtt |
28649557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 28639923 - 28640048
Alignment:
| Q |
47 |
cactttttcttatttgatatttcaagcaaacaaaa-ataacatatagtttatgcctgttgagtatggctcataggcagtgtcaagggggcaaggggagag |
145 |
Q |
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| T |
28639923 |
cactttttcttaattggtctttcaagcaaaaaaaaaataacatatggtctatgactattgagtatggaacataggcagtgtcaagggagcaaggggcgag |
28640022 |
T |
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| Q |
146 |
gtagaagagcgagcatagcgagtatc |
171 |
Q |
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| T |
28640023 |
ggagtagagcaagcgtaacgagtatc |
28640048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 28649603 - 28649649
Alignment:
| Q |
388 |
aaatgagtctagcagaaaaactcacacacagaagtggaaatttgcgagt |
436 |
Q |
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| T |
28649603 |
aaatgagtctagcagaaaaact--cacacagaagtggagatttgcgagt |
28649649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 28640361 - 28640418
Alignment:
| Q |
274 |
ataaagcttgtaacattgtaaaccctaactttgtcaatcgaaatattctagaactaca |
331 |
Q |
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| T |
28640361 |
ataaagcttgcaatattgtaaaccctaactttgtccattcaaatattacagaactaca |
28640418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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