View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_13 (Length: 443)
Name: NF1758_low_13
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Original strand, 40725623 - 40726036
Alignment:
| Q |
14 |
atcaatctttgccattgactgctcaatctgccagaaaatagaacatatataagtatataacagtaggcatcttccacatagcggctataacaaagccaca |
113 |
Q |
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| T |
40725623 |
atcaatctttgccattgactgctcaatctgccagaaaatagaacatatataagtatataacagtaggcatcttccacatagcggctataacaaagccaca |
40725722 |
T |
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| Q |
114 |
caaaactaatgtagtcaataacttatcgtcaatcatataagccgggaccctgaaatatgatgattaaaatatctatgtacacagggaaatgagaatgcat |
213 |
Q |
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| T |
40725723 |
caaaactaatgtggtcaataacttatcgtcaatcatataagccgggacactgaaatatgaggattaaaatatctatgtacacagggaaatgagaatgcat |
40725822 |
T |
|
| Q |
214 |
ataatgtagacattagaacaagggcacaaaatataccttaagctgtgcctgaggatctaaatctggtaagggaaatttttctagagggagatccttgatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40725823 |
ataatgtagacattagaacaagggcacaaaatataccttaagctgtgcctgaggatctaaatctggtaagggaaatttttctagagggagatccttgatc |
40725922 |
T |
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| Q |
314 |
tcatttaaaaagtactcttcccaaggtgcaatcaacaatatgcctttcccttctttgccttcccgtcccgttcttccaagacgatgtatatattgttcac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40725923 |
tcatttaaaaagtactcttcccaaggtgcaatcaacaatatgcctttcccttctttgccttcccgtcccgttcttccaagacgatgtatatattgttcac |
40726022 |
T |
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| Q |
414 |
ggtctgaaggaatt |
427 |
Q |
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| T |
40726023 |
ggtctgaaggaatt |
40726036 |
T |
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