View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_14 (Length: 417)
Name: NF1758_low_14
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 409
Target Start/End: Complemental strand, 30710988 - 30710583
Alignment:
| Q |
7 |
gacatcatcaattcacaat---caagtagaactgacaaagggagaatgaagaatatatttaaaatattaccacagttcaaaatcatgtaaacaccaaggt |
103 |
Q |
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||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30710988 |
gacatcatcaattcataataatcaagaagaactgagaaagggagaatgaagaatatatttaaaatattaccacagttcaaaatcatgtaaacaccaaggt |
30710889 |
T |
|
| Q |
104 |
ctcttttaattcagcgggaacgcctcctcctatatctggtgtagcaacggaaactccatagaaataccagaaaagcaactagaaccacttgtagaataat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30710888 |
ctcttttaattcagcgggaacgcctcctcctatatctggtgtagcaacggaaactccatagaaataccagaaaagcaactacaaccacttgtagaataat |
30710789 |
T |
|
| Q |
204 |
tgccaacttcaaacctaaaccagcaacttccaatttacatttacccaaaattgtaaagacaagaaaattttgtttgataaaaactagtaagttaccacta |
303 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
30710788 |
tgccaatttcaaacctaaaccagcaacttccaatttatatttacccaaaattgtaaagacaggaaaattttgttggataagaactagtaagttaccactg |
30710689 |
T |
|
| Q |
304 |
aggctatgagctgattcctctgacttcactccattttctgtttctttttcagaaaaaacaccctgatcgcttgcttttgaattgtaattgccttacatgt |
403 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||| |
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| T |
30710688 |
aggctatgagctgattcctctgccttcgctccattttctgtttctttttcagaaaaaacactctgatcgcgtacttttgaattgtaattgccatacatgt |
30710589 |
T |
|
| Q |
404 |
tctctg |
409 |
Q |
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|||||| |
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| T |
30710588 |
tctctg |
30710583 |
T |
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