View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1758_low_15 (Length: 412)

Name: NF1758_low_15
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1758_low_15
NF1758_low_15
[»] chr4 (8 HSPs)
chr4 (18-397)||(25039189-25039569)
chr4 (123-397)||(25018075-25018353)
chr4 (49-246)||(4600856-4601054)
chr4 (109-222)||(4625028-4625141)
chr4 (308-395)||(4600733-4600820)
chr4 (308-395)||(4624871-4624958)
chr4 (138-200)||(25047277-25047339)
chr4 (353-391)||(25189728-25189766)
[»] chr2 (5 HSPs)
chr2 (118-222)||(18803514-18803618)
chr2 (318-397)||(18803706-18803785)
chr2 (340-388)||(42167706-42167754)
chr2 (322-388)||(42157211-42157277)
chr2 (322-387)||(42290147-42290212)
[»] chr5 (1 HSPs)
chr5 (139-220)||(30360258-30360339)
[»] chr6 (2 HSPs)
chr6 (340-387)||(29460418-29460465)
chr6 (153-220)||(29405644-29405711)


Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 25039569 - 25039189
Alignment:
Q  18 ataaagtataattgatttatgagaattgaattcaatcatagattttaccttatgaagctctaatatttagtttgcaattttttgtccagtatatatatgg 117  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25039569 ataaagtataattgatttataagaattgaattcaatcatagattttaccttatgaagctctaatatttagtttgcaattttttgtccagtatatatattg 25039470  T
Q  118 taaccatttttacatcttaataggaggatgttgcaatcatgaagtatatgaatacagatgcatatagattctccatctcttggccaagaatattgccaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25039469 taaccatttttacatcttaataggaggatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttggccaagaatattgccaag 25039370  T
Q  218 taataacaaatcttgaatttagtcacatcctttattcacctaaagtttcatgtctaggtgaa-ctttcatttacatgaactaattaacagttctaacaaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  25039369 taataacaaatcttgaatttagtcacatcctttattcacctaaagtttcatgtctaggtgaatctttcatttacatgaactaattaacagttttaacaaa 25039270  T
Q  317 tatgcagaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaactacttgat 397  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25039269 tatgcagaaggaaaagtaagtgaaggtataaaccaagaaggaatcaaatattacaacaacctgatcaatgaactacttgat 25039189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 123 - 397
Target Start/End: Complemental strand, 25018353 - 25018075
Alignment:
Q  123 atttttacatcttaataggaggatgttgcaatcatgaagtatatgaatacagatgcatatagattctccatctcttggccaagaatattgccaagtaata 222  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25018353 atttttacatcttaataggaagatgtcgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttggccaagaatattgccaagtaata 25018254  T
Q  223 acaaatcttgaattta--gtcacatccttta-ttcacctaaagtttcatgtctaggtgaa-ctttcatttacatgaactaattaacagttctaacaaata 318  Q
    ||||||  ||||||||  ||||||||||| | |||||||| |||||||| | | |||||| |||||||||| | ||||||| |||| | |  ||||||||    
T  25018253 acaaatgatgaatttattgtcacatccttcagttcacctagagtttcatctattggtgaatctttcatttatacgaactaactaacggcttaaacaaata 25018154  T
Q  319 tgcagaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaactacttgat 397  Q
    ||||||||||||||||||||  ||||||||  ||||||||||||||||||||||||| ||||||||||| |||||||||    
T  25018153 tgcagaaggaaaagtaagtgcgggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgat 25018075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 49 - 246
Target Start/End: Complemental strand, 4601054 - 4600856
Alignment:
Q  49 tcaatcatagattttaccttatgaagctctaatatttagtttgcaatttt-ttgtccagtatatatatggtaaccatttttacatcttaataggaggatg 147  Q
    ||||| ||||||||||| ||||||| ||||||||||| |||| ||| ||| ||||| ||||||||| |  ||||||||||||||||||||||||| ||||    
T  4601054 tcaattatagattttactttatgaatctctaatattttgtttccaactttcttgtctagtatatatgtattaaccatttttacatcttaataggaagatg 4600955  T
Q  148 ttgcaatcatgaagtatatgaatacagatgcatatagattctccatctcttggccaagaatattgccaagtaataacaaatcttgaatttagtcacatc 246  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||  |||| || |||||||| |||||    
T  4600954 ttgcaatcatgaagtatatgaatacagatgcatacagattctccatatcttggccaaggatattgccaagtaatagaaaatgtttaatttagttacatc 4600856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 4625141 - 4625028
Alignment:
Q  109 tatatatggtaaccatttttacatcttaataggaggatgttgcaatcatgaagtatatgaatacagatgcatatagattctccatctcttggccaagaat 208  Q
    ||||| || |||||||| ||||||||||| |||| ||||||  |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| ||    
T  4625141 tatatgtgttaaccattgttacatcttaacaggaagatgttcaaatcatgaagaatatgaatacagatgcatacagattctccatatcttggccaaggat 4625042  T
Q  209 attgccaagtaata 222  Q
    | | ||||||||||    
T  4625041 agttccaagtaata 4625028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 308 - 395
Target Start/End: Complemental strand, 4600820 - 4600733
Alignment:
Q  308 tctaacaaatatgcagaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaactacttg 395  Q
    ||||||||||||||||| |||||| ||||||  ||||||||| |||||||||||| || ||||||||| |||||  |||| |||||||    
T  4600820 tctaacaaatatgcagatggaaaactaagtggcggtataaaccaagaaggaatcagattttacaacaatctgattgatgagctacttg 4600733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 395
Target Start/End: Complemental strand, 4624958 - 4624871
Alignment:
Q  308 tctaacaaatatgcagaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaactacttg 395  Q
    ||||||||||||||||  |||||| ||||||| ||| ||||| ||| |||||||| || |||||| ||||||||| |||| |||||||    
T  4624958 tctaacaaatatgcagctggaaaaataagtgacggtgtaaaccaagcaggaatcatattttacaagaacctgatctatgagctacttg 4624871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 25047339 - 25047277
Alignment:
Q  138 taggaggatgttgcaatcatgaagtatatgaatacagatgcatatagattctccatctcttgg 200  Q
    ||||| ||||||| ||||||||||||||||||||  ||||| |||||||||||||| ||||||    
T  25047339 taggaagatgttggaatcatgaagtatatgaatatggatgcttatagattctccatttcttgg 25047277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 25189766 - 25189728
Alignment:
Q  353 gaaggaatcaaatattacaacaacctgatcaatgaacta 391  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  25189766 gaaggaatcaaatattacaacaacctcatcaacgaacta 25189728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 18803514 - 18803618
Alignment:
Q  118 taaccatttttacatcttaataggaggatgttgcaatcatgaagtatatgaatacagatgcatatagattctccatctcttggccaagaatattgccaag 217  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||    
T  18803514 taaccatttttacatcttcataggaagatgttgcaatcatgaagtatatgaatacagatgcatacagattctccatctcttgggcgaggatattgccaag 18803613  T
Q  218 taata 222  Q
    |||||    
T  18803614 taata 18803618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 397
Target Start/End: Original strand, 18803706 - 18803785
Alignment:
Q  318 atgcagaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaactacttgat 397  Q
    |||||||||||||| | ||||  |||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||    
T  18803706 atgcagaaggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatgagctacttgat 18803785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 42167754 - 42167706
Alignment:
Q  340 aggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaa 388  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  42167754 aggtataaaccaagaaggaatcaaatattacaacaacctcatcaatgaa 42167706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 42157277 - 42157211
Alignment:
Q  322 agaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatgaa 388  Q
    |||||||||| | | || |||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  42157277 agaaggaaaacttaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatgaa 42157211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 387
Target Start/End: Original strand, 42290147 - 42290212
Alignment:
Q  322 agaaggaaaagtaagtgaaggtataaacaaagaaggaatcaaatattacaacaacctgatcaatga 387  Q
    |||||||||| | | || |||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  42290147 agaaggaaaaattaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatga 42290212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 30360258 - 30360339
Alignment:
Q  139 aggaggatgttgcaatcatgaagtatatgaatacagatgcatatagattctccatctcttggccaagaatattgccaagtaa 220  Q
    |||| |||||||  ||||||||||||||||||  ||||||||||||||| |||||||| ||| | |||||| | ||||||||    
T  30360258 aggaagatgttgggatcatgaagtatatgaatttagatgcatatagattatccatctcatggtctagaatactaccaagtaa 30360339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 29460465 - 29460418
Alignment:
Q  340 aggtataaacaaagaaggaatcaaatattacaacaacctgatcaatga 387  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  29460465 aggtataaacaaggaaggaatcaattattacaacaacctcatcaatga 29460418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 29405644 - 29405711
Alignment:
Q  153 atcatgaagtatatgaatacagatgcatatagattctccatctcttggccaagaatattgccaagtaa 220  Q
    ||||||||| | ||||| |  ||||| || |||||||| ||||||||| |||||||||||||||||||    
T  29405644 atcatgaaggacatgaacatggatgcttacagattctcaatctcttggtcaagaatattgccaagtaa 29405711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University