View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_18 (Length: 396)
Name: NF1758_low_18
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 2499194 - 2498833
Alignment:
| Q |
18 |
taaagtgcattagcgtgttgctacttgcagccattcattcattccactttacagcatgatgatgattcaacttttataatttagcttaacttatcttcat |
117 |
Q |
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| T |
2499194 |
taaagtgcattagcgtgctgctacttgcagccattcattcattccactttacagcatgatgatgattcaacttttataatttagcttaacttatcttcat |
2499095 |
T |
|
| Q |
118 |
tcctcacttttctgttcaaaactgaatgaactgaaacaattccaaacatggcacaagtgaggaacaagcaagtgattctgaaggactatgtatctggttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2499094 |
tcctcacttttctgttcaaaactgaatgaactgaaacaattccaaacatggcacaagtgaggaacaagcaagtgattctgaaggactatgtatctggttt |
2498995 |
T |
|
| Q |
218 |
tcctaaagaatcagacatgaacattattgaaagtataattactcttaagcttccacaaggttccaatgatgttctgctaaaaaatttatacttgtcttgt |
317 |
Q |
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| T |
2498994 |
tcctaaagaatcagacatgaacattattgaaagtataattactcttaagcttccacaaggttccaatgatgttctgctaaaaaatttatacttgtcttgt |
2498895 |
T |
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| Q |
318 |
gatccattcatgaggaatctcatgaacaaaccacaaggagctcccattaatcctcttgcata |
379 |
Q |
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| T |
2498894 |
gatccattcatgaggaatctcatgaacaaaccacaaggagctcccattaatcctcttgcata |
2498833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 175 - 331
Target Start/End: Original strand, 2430816 - 2430975
Alignment:
| Q |
175 |
tgaggaacaagcaagtgattctgaaggactatgtatctggttttcctaaagaatcagacatgaacattattgaaagtataattactcttaagcttccaca |
274 |
Q |
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| T |
2430816 |
tgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtactataactctcaagcttccaca |
2430915 |
T |
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| Q |
275 |
aggttccaatga---tgttctgctaaaaaatttatacttgtcttgtgatccattcatgag |
331 |
Q |
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| T |
2430916 |
aggttcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgag |
2430975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 179 - 345
Target Start/End: Complemental strand, 2519370 - 2519201
Alignment:
| Q |
179 |
gaacaagcaagtgattctgaaggactatgtatctggttttcctaaagaatcagacatgaacattattgaaagtataattactcttaagcttccacaaggt |
278 |
Q |
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| T |
2519370 |
gaacaagcaagtaattctgaaacactatgtgtctggttttcctaaagaatcagacatgaacatcattgacagtaccataactctcaagcttccacaagct |
2519271 |
T |
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| Q |
279 |
tccaatgatg---ttctgctaaaaaatttatacttgtcttgtgatccattcatgaggaatctcatgaaca |
345 |
Q |
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| T |
2519270 |
tccaatgatgttcttctgctcaaaaatctctacttgtcttgtgatccttacatgaggaatcttatgaaca |
2519201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 172 - 331
Target Start/End: Original strand, 2434393 - 2434555
Alignment:
| Q |
172 |
aagtgaggaacaagcaagtgattctgaaggactatgtatctggttttcctaaagaatcagacatgaacattattgaaagtataattactcttaagcttcc |
271 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||| |||| || || || |||||||| |
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| T |
2434393 |
aagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtaccataacactcaagcttcc |
2434492 |
T |
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| Q |
272 |
acaaggttccaatgat---gttctgctaaaaaatttatacttgtcttgtgatccattcatgag |
331 |
Q |
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|||||||||||||||| ||| |||| |||||| | ||||||||||||||||| | |||||| |
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| T |
2434493 |
acaaggttccaatgatgtggttttgctcaaaaatctgtacttgtcttgtgatccttacatgag |
2434555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 111 - 322
Target Start/End: Original strand, 2427497 - 2427712
Alignment:
| Q |
111 |
tcttcattcctcacttttctgttcaaaactgaatgaactgaaac-aattccaaacatggcacaagtgaggaacaagcaagtgattctgaaggactatgta |
209 |
Q |
| |
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||||||||| | ||||||||||| ||||||| |||||| || | |||||| |||||||| |||||||| ||||||||||||||| ||| |||||||| |
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| T |
2427497 |
tcttcattcattacttttctgttgtaaactgagtgaactaaacccaattcctaacatggcgcaagtgagaaacaagcaagtgattttgagagactatgtg |
2427596 |
T |
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| Q |
210 |
tctggttttcctaaagaatcagacatgaacattattgaaagtataattactcttaagcttccacaaggttccaatga---tgttctgctaaaaaatttat |
306 |
Q |
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|||||||||||||| |||||||||||||| || |||| |||| ||||| ||| || |||||||||||||||||||| ||||||||| |||||| | | |
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| T |
2427597 |
tctggttttcctaaggaatcagacatgaatgttgttgatagtacaattattctcaaccttccacaaggttccaatgatgttgttctgctcaaaaatctct |
2427696 |
T |
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| Q |
307 |
acttgtcttgtgatcc |
322 |
Q |
| |
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|||| || |||||||| |
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| T |
2427697 |
acttatcctgtgatcc |
2427712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 154 - 322
Target Start/End: Original strand, 1457834 - 1458005
Alignment:
| Q |
154 |
caattccaaacatggcacaagtgaggaacaagcaagtgattctgaaggactatgtatctggttttcctaaagaatcagacatgaacattattgaaagtat |
253 |
Q |
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||||||| |||||||| |||||||| ||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| || |||| |||| |
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| T |
1457834 |
caattcctaacatggcgcaagtgagaaacaagcaagtgattttgagagactatgtgtctggttttcctaaggaatcagacatgaatgttgttgatagtac |
1457933 |
T |
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| Q |
254 |
aattactcttaagcttccacaaggttccaatga---tgttctgctaaaaaatttatacttgtcttgtgatcc |
322 |
Q |
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| T |
1457934 |
aattattctcaaccttccacaaggttccaatgatgttgttctgctaaaaaatctctacttatcctgtgatcc |
1458005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 342
Target Start/End: Complemental strand, 2507582 - 2507402
Alignment:
| Q |
165 |
atggcacaagtgaggaacaagcaagtgattctgaaggactatgtatctggttttcctaaagaatcagacatgaacattattgaaagtataattactctta |
264 |
Q |
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||||||||||| | ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| | |||||| |||| |||| || | ||||| |
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| T |
2507582 |
atggcacaagtaaagaacaagcaagtgcttctgaaacactatgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataaatctta |
2507483 |
T |
|
| Q |
265 |
agcttccacaaggttccaatga---tgttctgctaaaaaatttatacttgtcttgtgatccattcatgaggaatctcatga |
342 |
Q |
| |
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|||||||| ||||||||||||| ||| || | |||||| | ||||||||||||||||| | |||||||| ||| |||| |
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| T |
2507482 |
agcttccagaaggttccaatgatactgtattggttaaaaatctttacttgtcttgtgatccttacatgaggactcttatga |
2507402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 287
Target Start/End: Complemental strand, 2514677 - 2514550
Alignment:
| Q |
160 |
caaacatggcacaagtgaggaacaagcaagtgattctgaaggactatgtatctggttttcctaaagaatcagacatgaacattattgaaagtataattac |
259 |
Q |
| |
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|||| ||||| ||||| | |||| |||||||| ||||||| | ||||| |||||||||||||||||||||||| | |||||| |||| |||| || | |
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| T |
2514677 |
caaaaatggctcaagtaaagaaccagcaagtgcttctgaaacattatgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataaa |
2514578 |
T |
|
| Q |
260 |
tcttaagcttccacaaggttccaatgat |
287 |
Q |
| |
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||||||||||||| |||||||||||||| |
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| T |
2514577 |
tcttaagcttccagaaggttccaatgat |
2514550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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