View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1758_low_2 (Length: 870)

Name: NF1758_low_2
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1758_low_2
NF1758_low_2
[»] chr1 (3 HSPs)
chr1 (530-854)||(39928873-39929197)
chr1 (226-514)||(39928543-39928831)
chr1 (89-172)||(39928403-39928488)
[»] chr5 (2 HSPs)
chr5 (2-41)||(38040342-38040381)
chr5 (5-38)||(41539394-41539427)
[»] chr2 (2 HSPs)
chr2 (8-43)||(32677412-32677447)
chr2 (2-35)||(40172441-40172474)
[»] chr4 (2 HSPs)
chr4 (2-39)||(9302639-9302676)
chr4 (2-39)||(12585540-12585577)
[»] chr3 (1 HSPs)
chr3 (462-503)||(54001205-54001246)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 530 - 854
Target Start/End: Original strand, 39928873 - 39929197
Alignment:
Q  530 aacatatgagtccgatatttgaatcaatagaagtcagatttgtttggccttggattcaaatagaatagaaaaaacttaccaattcaattgacttagattg 629  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  39928873 aacatatgagaccgatatttgaatcaatagaagtcagatttgtttggccttggactcaaatagaatagaaaaaacataccaattcaattgacttagattg 39928972  T
Q  630 aattttcgagtttatagaatgattgtttgatttgtactctactaaaaatatatatgaagaaatgatatgaataatctcccatgttccataggttccacac 729  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39928973 aattttcgagtttatagaatgattgtttggtttgtactctactaaaaatatatatgaagaaatgatatgaataatctcccatgttccataggtaccacac 39929072  T
Q  730 tatctattcttattttttattaagcatatagcaggtgacattatttgttataattgttcaagtatttattggagactatacatcactcattcactaaata 829  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39929073 tatctattcttattttttattaagcatatagcaggtgacattatttgttataattgttcaagtatttattggagactatacatcactcattcactaaata 39929172  T
Q  830 taacaatcaaatctcccccaccacc 854  Q
    |||||||||||||||||||||||||    
T  39929173 taacaatcaaatctcccccaccacc 39929197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 226 - 514
Target Start/End: Original strand, 39928543 - 39928831
Alignment:
Q  226 caagtactaatcattttttatattattttaaaacaaatgtataatcaaccaagtgattcgactcaggtgtgagtttcatgaaagaacgactcgttcggga 325  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39928543 caagtactaaccgttttttatattattttaaaacaaatgtataatcaaccaagtgattcgactcaggtgtgagtttcacgaaagaacgactcgttcggga 39928642  T
Q  326 gaatccgagtttgatttctagatgaaacaattcttatttagattttacttaactttcgaccgaattcctgattaccagaaccctttctctaagaaccaaa 425  Q
    ||| |||| ||| |||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  39928643 gaacccgaatttaatttttagatgaaacaattcttatttaaattttacttaattttcgaccgaattcctgattaccataaccctttctctaagaaccaaa 39928742  T
Q  426 tgtttaatacaaaaaatctctaataaaaacaacataattttttaagataacactagtagtatagtatgaaattaaataaataattaaaa 514  Q
     ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39928743 ggtttaatacaaaaaatctcaaataaaaacaacataattttttaagataacactagtagtatagtatgaaattaaataaataattaaaa 39928831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 39928403 - 39928488
Alignment:
Q  89 cacgtaatctgaataaaccaaaatgatgaacaacannnnnnnnn--aataatgatgaacaacatgttgatttgatttggttcaacc 172  Q
    |||||||||||||||||||||||||||||||| ||           ||||||||||||||||||||||||||||||||||||||||    
T  39928403 cacgtaatctgaataaaccaaaatgatgaacagcatttttttttttaataatgatgaacaacatgttgatttgatttggttcaacc 39928488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 38040342 - 38040381
Alignment:
Q  2 ttcatcttgaaaaaggtgaattttagtcactagactacct 41  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  38040342 ttcatcttgaaaaaggtgaattatagtcactaggctacct 38040381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 41539394 - 41539427
Alignment:
Q  5 atcttgaaaaaggtgaattttagtcactagacta 38  Q
    ||||||||||||||||||| ||||||||||||||    
T  41539394 atcttgaaaaaggtgaattctagtcactagacta 41539427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 32677412 - 32677447
Alignment:
Q  8 ttgaaaaaggtgaattttagtcactagactacctga 43  Q
    |||||||||||||||| |||||||||||||||||||    
T  32677412 ttgaaaaaggtgaattatagtcactagactacctga 32677447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 40172441 - 40172474
Alignment:
Q  2 ttcatcttgaaaaaggtgaattttagtcactaga 35  Q
    |||||||||||||||||||||||||| |||||||    
T  40172441 ttcatcttgaaaaaggtgaattttagccactaga 40172474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 9302676 - 9302639
Alignment:
Q  2 ttcatcttgaaaaaggtgaattttagtcactagactac 39  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  9302676 ttcaccttgaaaaaggtgaattttaatcactagactac 9302639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 12585577 - 12585540
Alignment:
Q  2 ttcatcttgaaaaaggtgaattttagtcactagactac 39  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  12585577 ttcatcttgaaaaaggtgaattctagccactagactac 12585540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 503
Target Start/End: Complemental strand, 54001246 - 54001205
Alignment:
Q  462 attttttaagataacactagtagtatagtatgaaattaaata 503  Q
    ||||||||||||||||||| || ||||||||||||| |||||    
T  54001246 attttttaagataacactactaatatagtatgaaataaaata 54001205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University