View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_20 (Length: 391)
Name: NF1758_low_20
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 7056842 - 7056548
Alignment:
| Q |
1 |
ataatgaaaatgaataacatgaaatttgaaacattatggacaaaaattgtgtcagaatctagataagctatgnnnnnnnttactcggcatcttaattcgg |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7056842 |
ataatgaaaatgaataacatcaaatttgaaacattatggacaaaaattgtgtcagaatctagataagctatgaaaaaaattactcggcatcttaattcgg |
7056743 |
T |
|
| Q |
101 |
gaactgtgagacgagaattaagagacgcattcagctcctgagtcaaagatctcctccacatatgcaaatcatcttcacaaaagctacccacaatgttgaa |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7056742 |
ggactgtgagacgagaattaagagacgcattcagctcctgagtcaaagatctcctccacatatgcaaatcatcttcacaaaagctacccacaatgttgaa |
7056643 |
T |
|
| Q |
201 |
caaattaattcctgagagacactgaagatatgaaaaaacataagggtttatcattatcataactagaatgcaaacaagcatttctgctttttccc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7056642 |
caaattaattcctgagagacactgaagatatgaaaaaacacaagggtttatcattatcataactagaatgcaaacaagcatttctgctttttccc |
7056548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 7047970 - 7047669
Alignment:
| Q |
1 |
ataatgaaaatgaataacatgaaatttgaaacattatggacaaaaattgtgtcagaatctagataagctatgnnnnnnnttactcggcatcttaattcgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||||||| |
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| T |
7047970 |
ataatgaaaatgaataacatgaaatttgatacattatggacaaaaattgtgtccgaaaatagataagctatgaaaaaa-ttactcggcagcttaattcgg |
7047872 |
T |
|
| Q |
101 |
gaactgtgagacgagaattaagagacgcattcagctcctgagtcaaagatctcctccacatatgcaaatcatcttcacaaaagctacccacaatgttgaa |
200 |
Q |
| |
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| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |||| ||| ||||||||| |
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| T |
7047871 |
ggactgtgagacgagaactaagagacgcattcagctcctgagtcaaagatcttctccacatacgcaaatcatctttacaaatgctagccaaaatgttgaa |
7047772 |
T |
|
| Q |
201 |
caaattaattcctgagagacactgaagatatgaaaaaacataagggtttatcattatcataactagaatgcaaacaagcatttctgctttttccccgtct |
300 |
Q |
| |
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| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |
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| T |
7047771 |
cttgttaattcctgagagacactgaagataagaaaaaaccgaagggtttatcattatcataactagaatgcaaactagcatttctgcctttt-cccgtct |
7047673 |
T |
|
| Q |
301 |
ctca |
304 |
Q |
| |
|
|||| |
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| T |
7047672 |
ctca |
7047669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7005053 - 7004815
Alignment:
| Q |
1 |
ataatgaaaatgaataacatgaaatttgaaacattatggacaaaaattgtgtcagaatctagataagctatgnnnnnnnttactcggcatcttaattcgg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| || ||||| ||| |||||||| | |
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| T |
7005053 |
ataatgaaaatgaataacatcaaatttgaaacattatggacaaaaattctgtccgaatctagataagcgttgaaacaa-ttactttgcaacttaattcag |
7004955 |
T |
|
| Q |
101 |
gaactgtgagacgagaattaagagacgcattcagctcctgagtcaaagatctcctccacatatgcaaatcatcttcacaaaagctacccacaatgttgaa |
200 |
Q |
| |
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| ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||| ||||||||| |
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| T |
7004954 |
ggactgtgagacgagaactaagagattcgttcagctcctgagtcaaagatctcctccacagatgctcgtcatcttcacaattgctatccaaaatgttgaa |
7004855 |
T |
|
| Q |
201 |
caaattaattcctgagagacactgaagatatgaaaaaaca |
240 |
Q |
| |
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| ||||||| ||||||||||||||||||| |||| |||| |
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|
| T |
7004854 |
ctcattaattgctgagagacactgaagataagaaacaaca |
7004815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 7028394 - 7028161
Alignment:
| Q |
2 |
taatgaaaatgaataacatgaaatttgaaacattatggacaaaaattgtgtcagaatctagataagctatgnnnnnnnttactcggcatcttaattcggg |
101 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||| || || |||||||||||| |||| |||| ||||||| ||| |
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| T |
7028394 |
taatgaaaatgaataacatcaaatttaaaacattatggacaaaaattgtgtccgagtcaagataagctatgaagaaaattacatggcagcttaatttggg |
7028295 |
T |
|
| Q |
102 |
aactgtgagacgagaattaagagacgcattcagctcctgagtcaaagatctcctccacatatgcaaatcatcttcacaaaagctacccacaatgttgaac |
201 |
Q |
| |
|
|||||||||| ||||| |||||| || ||||||||| |||| ||||||||||||| | || |||||||||||||||||| | ||| |||||| | |
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| T |
7028294 |
aactgtgagaggagaactaagaggtgcgcccagctcctgtttcaacgatctcctccacagacgcgaatcatcttcacaaaagccatccaaaatgttttcc |
7028195 |
T |
|
| Q |
202 |
aaattaattcctgagagacactgaagatatgaaa |
235 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |
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| T |
7028194 |
ttattaattcctgagagacactaaagataagaaa |
7028161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7021682 - 7021457
Alignment:
| Q |
1 |
ataatgaaaatgaataacatgaaatttgaaacattatggacaaaaattgtgtcagaatctagataagctatgnnnnnnnttactcggcatcttaattcgg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||||||||| |||| ||| |||| || | |
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|
| T |
7021682 |
ataatgaaaatgaataacatcaaatttgaaacattatggataaacattgtgtccgaatctagataagctatg-aaaaaattacatagcagcttatctcag |
7021584 |
T |
|
| Q |
101 |
gaactgtgagacgagaattaagagacgcattcagctcctgagtcaaagatctcctccacatatgcaaatcatcttcacaaaagctacccacaatgttgaa |
200 |
Q |
| |
|
||||||||||| ||||| |||| || | |||||||| | ||||||| |||||||| | | ||| |||||||||||| |||||| ||| |||||| |
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|
| T |
7021583 |
gaactgtgagatgagaactaagggatgggatcagctcccgtgtcaaaggtctcctccgccgacgcatatcatcttcacataagctatccaatatgttgtc |
7021484 |
T |
|
| Q |
201 |
caaattaattcctgagagacactgaag |
227 |
Q |
| |
|
|| ||||||||||||||| ||||||| |
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| T |
7021483 |
catattaattcctgagagtaactgaag |
7021457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 6995285 - 6995090
Alignment:
| Q |
34 |
ttatggacaaaaattgtgtcagaatctagataagctatgnnnnnnnttactcggcatcttaattcgggaactgtgagacgagaattaagagacgcattca |
133 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| ||||| |||| ||| |||||| ||||||||||||||| |||||||| | |||| |
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|
| T |
6995285 |
ttatggacaaaaattgtgtgtgaatctagataagttatgaaaaac-ttacttggcagtttagttcgggcactgtgagacgagaaataagagactccttca |
6995187 |
T |
|
| Q |
134 |
gctcctgagtcaaagatctcctccacatatgcaaatcatcttcacaaaagctacccacaatgttgaacaaattaattcctgagagacactgaagata |
230 |
Q |
| |
|
|||| ||||||||||||| ||||||| | || |||||| |||||||||| | ||| ||||| ||||| || || |||||| || |||||| |||| |
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|
| T |
6995186 |
actcccgagtcaaagatcttctccacaaacgcggatcatcgtcacaaaagcgatccaaaatgtggaacatatcaagtcctgaaaggcactgatgata |
6995090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 308 - 367
Target Start/End: Complemental strand, 7056493 - 7056433
Alignment:
| Q |
308 |
tatagaagacaa-cgaaggttgctaagttttatgcgttttttagaaaattccaattatttg |
367 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7056493 |
tatagaagacaaacgaaggttgctaagttttatgcgttttttagaaaattctaattatttg |
7056433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 235
Target Start/End: Complemental strand, 7014692 - 7014537
Alignment:
| Q |
80 |
ttactcggcatcttaattcgggaactgtgagacgagaattaagagacgcattcagctcctgagtcaaagatctcctccacatatgcaaatcatcttcaca |
179 |
Q |
| |
|
||||| |||| ||||||||||| ||| ||||| ||||| || |||| |||| ||||||| |||| ||||| ||||| | |||| |||||||||||| |
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|
| T |
7014692 |
ttacttggcagcttaattcgggcactttgagatgagaactaggagaactcttcaactcctgaatcaatgatcttctccagagatgcggatcatcttcaca |
7014593 |
T |
|
| Q |
180 |
aaagctacccacaatgttgaacaaattaattcctgagagacactgaagatatgaaa |
235 |
Q |
| |
|
| ||||| ||| ||||||||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
7014592 |
atagctatccaaaatgttgaatgtattaattcctgagagacactgcagataagaaa |
7014537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 7021113 - 7021064
Alignment:
| Q |
242 |
aagggtttatcattatcataactagaatgcaaacaagcatttctgctttt |
291 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7021113 |
aagggattatcattatcataactagaatgcaaacaagcatttcagctttt |
7021064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 235
Target Start/End: Complemental strand, 7040701 - 7040608
Alignment:
| Q |
142 |
gtcaaagatctcctccacatatgcaaatcatcttcacaaaagctacccacaatgttgaacaaattaattcctgagagacactgaagatatgaaa |
235 |
Q |
| |
|
||||| ||||||||||| | |||| |||||||||||||| ||||| ||| ||||||||| |||||||||||| || ||||||||||| |||| |
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| T |
7040701 |
gtcaatgatctcctccagagatgcgaatcatcttcacaatagctatccaaaatgttgaatgtattaattcctgaaaggcactgaagatacgaaa |
7040608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 7028102 - 7028041
Alignment:
| Q |
242 |
aagggtttatcattatcataactagaatgcaaacaagcatttctgctttttccccgtctctca |
304 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
7028102 |
aagggattatcattatcgtaactagaatgcaaacaagcatttccacttttt-cccgtctctca |
7028041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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