View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1758_low_21 (Length: 387)

Name: NF1758_low_21
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1758_low_21
NF1758_low_21
[»] chr4 (4 HSPs)
chr4 (71-354)||(45760457-45760742)
chr4 (61-152)||(25062354-25062445)
chr4 (60-107)||(55897585-55897632)
chr4 (60-105)||(20512823-20512868)
[»] chr2 (3 HSPs)
chr2 (61-152)||(28282685-28282776)
chr2 (61-211)||(16576283-16576431)
chr2 (61-107)||(13712744-13712790)
[»] chr7 (2 HSPs)
chr7 (61-101)||(34891400-34891440)
chr7 (61-105)||(34891568-34891612)
[»] chr3 (2 HSPs)
chr3 (164-215)||(2563056-2563108)
chr3 (63-105)||(46303407-46303449)
[»] chr5 (2 HSPs)
chr5 (61-107)||(2243310-2243356)
chr5 (60-108)||(5205531-5205579)
[»] chr1 (1 HSPs)
chr1 (61-114)||(52432696-52432749)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 71 - 354
Target Start/End: Original strand, 45760457 - 45760742
Alignment:
Q  71 ttctttatcatcttcattcaacatgtgatctccatctaatttgtcccatactcaaatcctatttgaaattatgggtaaattaactttaattttatcaagg 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45760457 ttctttatcatcttcattcaacatgtgatctccatctaatttgtcccatactcaaatcctatttgacattatgggtaaattaactttaattttatcaagg 45760556  T
Q  171 ggtaatgtaagtctcaatgatagagttttttcttacaatcagttaccannnnnnnctcaagtacattaaaattcatca--nnnnnnnncattcaaaatgt 268  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||       ||||| |||||||||||||||||          ||||||||||||    
T  45760557 ggtaatgtaagtctcaacgatagagttttttcttacaatcagttaccatttttatctcaaatacattaaaattcatcattttttttttcattcaaaatgt 45760656  T
Q  269 gatattcatctcattcgttgaagagagacaagttacccccaattcatcaggggtaatgtacgcctcaccctagaaacctcaaacac 354  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  45760657 gatattcatctcattcgttcaagagagacaagttacccccaattcatcaggggtaatgtacacctcaccctaaaaacctcaaacac 45760742  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 25062354 - 25062445
Alignment:
Q  61 aacatcaaacttctttatcatcttcattcaacatgtgatctccatctaatttgtcccatactcaaatcctatttgaaattatgggtaaatta 152  Q
    ||||||||||||||| |||  ||||||| |||||||||||| |||||  ||||| ||||| |||||||||| |||  |||| ||||||||||    
T  25062354 aacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaatta 25062445  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 55897585 - 55897632
Alignment:
Q  60 aaacatcaaacttctttatcatcttcattcaacatgtgatctccatct 107  Q
    |||||||||||||||||||| | |||||||||||| |||||| |||||    
T  55897585 aaacatcaaacttctttatcttattcattcaacatatgatcttcatct 55897632  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 20512868 - 20512823
Alignment:
Q  60 aaacatcaaacttctttatcatcttcattcaacatgtgatctccat 105  Q
    |||||||||||||||| ||| |||||||| ||||||| ||||||||    
T  20512868 aaacatcaaacttcttcatcttcttcatttaacatgtaatctccat 20512823  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 152
Target Start/End: Original strand, 28282685 - 28282776
Alignment:
Q  61 aacatcaaacttctttatcatcttcattcaacatgtgatctccatctaatttgtcccatactcaaatcctatttgaaattatgggtaaatta 152  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||| ||| || ||||| ||||||  || |||  |||| ||||||||||    
T  28282685 aacatcaaacttctttatctgcttcattcaatatgtgatctccatctcattcgttccataatcaaattttacttgttattaggggtaaatta 28282776  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 16576283 - 16576431
Alignment:
Q  61 aacatcaaacttctttatcatcttcattcaacatgtgatctccatctaatttgtcccatactcaaatcctatttgaaattatgggtaaattaactttaat 160  Q
    ||||||||||||||| |||  |||||||||||||||||||||| ||| ||| || ||| | || |||| || ||   |||| ||||||||||||    |     
T  16576283 aacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaggggtaaattaac--ccaa 16576380  T
Q  161 tttatcaaggggtaatgtaagtctcaatgatagagttttttcttacaatca 211  Q
    || |||||||||||| ||| | | ||  |||||||||||||||||||||||    
T  16576381 ttcatcaaggggtaacgtaggccccacggatagagttttttcttacaatca 16576431  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 13712790 - 13712744
Alignment:
Q  61 aacatcaaacttctttatcatcttcattcaacatgtgatctccatct 107  Q
    ||||||||||||||||||| |||| ||||||||| | ||||||||||    
T  13712790 aacatcaaacttctttatcttctttattcaacatctaatctccatct 13712744  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 34891400 - 34891440
Alignment:
Q  61 aacatcaaacttctttatcatcttcattcaacatgtgatct 101  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  34891400 aacatcaaacttctttatcttcttcatttaacatgtgatct 34891440  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 34891568 - 34891612
Alignment:
Q  61 aacatcaaacttctttatcatcttcattcaacatgtgatctccat 105  Q
    ||||||||| ||||| |||  ||||||||||||||||||||||||    
T  34891568 aacatcaaatttcttcatctccttcattcaacatgtgatctccat 34891612  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 2563056 - 2563108
Alignment:
Q  164 atcaaggggtaatgtaagtctcaatgatagag-ttttttcttacaatcagtta 215  Q
    |||||||||||||||| |||||| |||||||| ||||||||||||| ||||||    
T  2563056 atcaaggggtaatgtaggtctcattgatagagattttttcttacaagcagtta 2563108  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 46303407 - 46303449
Alignment:
Q  63 catcaaacttctttatcatcttcattcaacatgtgatctccat 105  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||    
T  46303407 catcaaacttcttcatcttctttattcaacatgtgatctccat 46303449  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 2243356 - 2243310
Alignment:
Q  61 aacatcaaacttctttatcatcttcattcaacatgtgatctccatct 107  Q
    ||||||||||||||| ||   ||||||||||||||||||||||||||    
T  2243356 aacatcaaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 5205579 - 5205531
Alignment:
Q  60 aaacatcaaacttctttatcatcttcattcaacatgtgatctccatcta 108  Q
    ||||||||||||| ||||||  ||| ||| |||||||||||||||||||    
T  5205579 aaacatcaaacttttttatctcctttattaaacatgtgatctccatcta 5205531  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 52432696 - 52432749
Alignment:
Q  61 aacatcaaacttctttatcatcttcattcaacatgtgatctccatctaatttgt 114  Q
    ||||| ||||||||| |||  ||||||| |||| ||||||||||||||||||||    
T  52432696 aacattaaacttcttcatctccttcatttaacaagtgatctccatctaatttgt 52432749  T

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