View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_23 (Length: 375)
Name: NF1758_low_23
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 25039212 - 25038847
Alignment:
| Q |
1 |
aacctgatcaatgaactacttgataatggtaatgcatattcatgaaattcataannnnnnnactaaatgatataatcatggtaatataaattgatggact |
100 |
Q |
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| T |
25039212 |
aacctgatcaatgaactacttgataatggtaatgcatattcatgaaattcataatttttttactaaatgatataatcatagtaatataaattgatggact |
25039113 |
T |
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| Q |
101 |
tattgatccagatctggtaccatttgtgacccttttccattgggatcttccccaagttttacaagacgagtacagcggtttcttaagccctaatattatg |
200 |
Q |
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| T |
25039112 |
tattgatccaggtctggtaccatttgtgacccttttccattgggatcttccccaagttttacaagacgagtacagcggtttcttaagccctaatattatg |
25039013 |
T |
|
| Q |
201 |
taagttgcatggcgcaaattttcattcaagcaataataatatatcgatggctacttatataaattgaatttttatttaacagcgttaatttatatgagca |
300 |
Q |
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| T |
25039012 |
taagttgcatggtgcaaattttcattcaagcaataataatatatcgatggctacttatataaattgaatttttatttaacagcgttaatttatatgagca |
25038913 |
T |
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| Q |
301 |
cgatccatgatagagctttatgaagtcgattgaaatatgtattttatatggtttcattgatgatgt |
366 |
Q |
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| T |
25038912 |
cgatccatgatagagctttatgacgtcgattgaaatatgtattttatatggtttcattgctgatgt |
25038847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 25017990 - 25017806
Alignment:
| Q |
72 |
ataatcatggtaatataaattgatggacttattg--atccagatctggtaccatttgtgacccttttccattgggatcttccccaagttttacaagacga |
169 |
Q |
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| T |
25017990 |
ataataatagtaatataaattgatggaattattggtatataggtctggtaccatttgtgaccctttttcactgggatcttccccaagccctacaagacga |
25017891 |
T |
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| Q |
170 |
gtacagcggtttcttaagccctaatattatgtaagttgcatggcgcaaattttcattcaagcaataataatatatcgatggctac |
254 |
Q |
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| T |
25017890 |
gtacagtggcttcttaagcccttatattatgtaagttgcatgacacaaattttcattcaagcaataataataaatcgatcgctac |
25017806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 4624804 - 4624732
Alignment:
| Q |
82 |
taatataaattgatggacttattgatccagatctggtaccatttgtgacccttttccattgggatcttcccca |
154 |
Q |
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| T |
4624804 |
taatataaattgatggaattattgatccaggtcaaataccatatgtgaccctttttcattgggatcttcccca |
4624732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 4600477 - 4600386
Alignment:
| Q |
82 |
taatataaattgatggacttattgatccagatctggtaccatttgtgacccttttccattgggatcttccccaagttttacaagacgagtac |
173 |
Q |
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| T |
4600477 |
taatataaattgatggaattattgatccaggtcaaataccatatgtaaccctttttcattgggatctgcccaacatcttacaagaggagtac |
4600386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 25189571 - 25189515
Alignment:
| Q |
132 |
cttttccattgggatcttccccaagttttacaagacgagtacagcggtttcttaagc |
188 |
Q |
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| T |
25189571 |
ctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagc |
25189515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 25018095 - 25018061
Alignment:
| Q |
4 |
ctgatcaatgaactacttgataatggtaatgcata |
38 |
Q |
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| T |
25018095 |
ctgatcaatgagctacttgataatggtaatgcata |
25018061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 18803840 - 18803922
Alignment:
| Q |
72 |
ataatcatggtaatataaattgatggacttattgatccagatctggtaccatttgtgacccttttccattgggatcttcccca |
154 |
Q |
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|||||||| |||||||||||||| || |||||||||||| ||| ||||||| |||||||||||| |||| |||| ||||||| |
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| T |
18803840 |
ataatcatagtaatataaattgactgagttattgatccaggtctagtaccatatgtgaccctttttcattcggattttcccca |
18803922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18803762 - 18803799
Alignment:
| Q |
1 |
aacctgatcaatgaactacttgataatggtaatgcata |
38 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |
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| T |
18803762 |
aacctgatcaatgagctacttgataatggtaatgcata |
18803799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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