View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_27 (Length: 359)
Name: NF1758_low_27
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 15344985 - 15344639
Alignment:
| Q |
1 |
cctatcgtgtaaaaattagataaccaaaacaatgaacaatgcgattacgcttgagtaaatgcggttacgcctttgtaaaattatggttatatgctttagt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15344985 |
cctatcatgtaaaaattagataaccaaaacaatgaacaatgcgattacgcctgagtaaatgtggttacgcctttgtaaaattatggttatatgctttagt |
15344886 |
T |
|
| Q |
101 |
taannnnnnnnnngat----caagcaatgaaaagcattaaactgacaggattgggcctgaacccttgacaaaagttatcacattacaacctataataagg |
196 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15344885 |
taatttttttttttatttatcaagcaatgaaaagcattaaactgacaggattgggcctgaacccttgtcaaaagttatcacattacaacctataataagg |
15344786 |
T |
|
| Q |
197 |
caaaccagaaccatctataagaaacaaatgaagaataaaagatggagggttattcccacattgtgatgagaacgtggatatgcatcagtcttatgcagag |
296 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15344785 |
cagaccagaaccatctataagaaacaaatgaagaataaaagatggagggttattcccccattgtgatgagaatgtggatatgcatcagtcttatgcagag |
15344686 |
T |
|
| Q |
297 |
ctatgggaaagaacatgttttttgaaacgtgtcttcatcccttcctt |
343 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
15344685 |
ctatgggaaagaacatgtgttttgaaacgtgtcttgatcccttcctt |
15344639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 40503995 - 40503893
Alignment:
| Q |
1 |
cctatcgtgtaaaaattagataaccaaaacaatgaacaatgcgattacgcttgagtaaatgcggttacgcctttgtaaaattatggttatatgctttagt |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |
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|
| T |
40503995 |
cctatcatgtaaaaattagataaccaaaacaatgaacaatgcgattacgcctgagtaaatgtggttacgcctttgtaaaattatggttatatgcttcagt |
40503896 |
T |
|
| Q |
101 |
taa |
103 |
Q |
| |
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||| |
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| T |
40503895 |
taa |
40503893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24706502 - 24706604
Alignment:
| Q |
1 |
cctatcgtgtaaaaattagataaccaaaacaatgaacaatgcgattacgcttgagtaaatgcggttacgcctttgtaaaattatggttatatgctttagt |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
24706502 |
cctatcatgtaaaatttagataaccaaaacaatgaacaatgcgattacgcctgagtaaatgtggttacgcctttgtaaaattatggttatatgcttcagt |
24706601 |
T |
|
| Q |
101 |
taa |
103 |
Q |
| |
|
||| |
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|
| T |
24706602 |
taa |
24706604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 31045755 - 31045708
Alignment:
| Q |
115 |
atcaagcaatgaaaagcattaaactgacaggattgggcctgaaccctt |
162 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
31045755 |
atcaagcaatgaaaagcattaaactaacaggattgggcctcaaccctt |
31045708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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