View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_30 (Length: 346)
Name: NF1758_low_30
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 12582215 - 12581887
Alignment:
| Q |
1 |
tgcaagagtaagttacatgtaactagaatgcagtgtaactaa---catactgctgcgtactatctaagcctcctaactgaatcctagcaacct--ataac |
95 |
Q |
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| T |
12582215 |
tgcaagagtaagttacatgtaactagaatgcagtgtaactaattacatactactgcgtactatctaagcctcgaaactgaatcttagcaacctctataac |
12582116 |
T |
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| Q |
96 |
cgtcaatcgcttgtgtggcaaattcagttagttcgatagtaagttacttggatctcaagtaactacatcttcttcattatgttttaacagccttccatta |
195 |
Q |
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| T |
12582115 |
cgtcaatcgcttgtgtggcaaattcagttagtttgatagtaagttacttggatctcaagtaactacatcttc---attatgttttaacagccttccataa |
12582019 |
T |
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| Q |
196 |
taagctggagtttggtatatgtctactaccatgcctagctgagatgacaaggaaatacttaggatgaagggacttgatgaagaaatcagttgcttgttca |
295 |
Q |
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| T |
12582018 |
taagctggagtttggtatatgtctac---catgcctagctgagatgacaaggaaatacttaggatgaagggacttgatgaagaaatcagttgcttgttca |
12581922 |
T |
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| Q |
296 |
ctacttgaattggtatagcaatctgatggtgccttct |
332 |
Q |
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| T |
12581921 |
ctacttgaattg--atagcaatctgatggtgccttct |
12581887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 12615065 - 12615207
Alignment:
| Q |
44 |
atactgctgcgtactatctaagcctcctaactgaatcctagcaacctataaccgtcaatcgcttgtgtggcaaattcagtta----gttcgatagtaagt |
139 |
Q |
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| T |
12615065 |
atactactgcatactatttaagcctcttagctgaatcctaacaacatatatatgtcaattgcttgcatggcaaattcagttaattagtttgatagtaagt |
12615164 |
T |
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| Q |
140 |
tacttggatctcaagtaactacatcttcttcattatgttttaacag |
185 |
Q |
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| T |
12615165 |
tccttggatctcaagtaacgacatctt---cattatgtttttacag |
12615207 |
T |
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