View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_31 (Length: 342)
Name: NF1758_low_31
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 481717 - 481394
Alignment:
| Q |
1 |
taaccaaaatcttgcatagtgtcccacaaatttctctaataattaagaacttattatacatatacaaaaatagtaaacagtaacttcaatcatgtacata |
100 |
Q |
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| T |
481717 |
taaccaaaatcttgcatagtgtcccacaaatttctctaataattaagaacttattatacatatacaaaaatagtaaacagtaacttcaatcatgtacata |
481618 |
T |
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| Q |
101 |
tattgctcagaaactatatcaaggaaatcaaaaatagaaaagctatggtgacattcatttattgtaacaaatttgactagattatgtggataatctcacc |
200 |
Q |
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| T |
481617 |
tattgctcagaaactatatcaaggaaatcaaaaatagaaaagctatggtgacattcatttattgtaacaaatttgactagattatgtggataatctcacc |
481518 |
T |
|
| Q |
201 |
attaaaatgtatgtattaagctctacaacttattaacattataagggggatcgaatgcattttaatgtttggaggatccaaatccctcaattaatagagt |
300 |
Q |
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| T |
481517 |
attaaaatgtatgtattaagctctacaacttattaacattataagggggatcgaatgcattttaatgtttggaggatccaaatccctcaattaatagagt |
481418 |
T |
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| Q |
301 |
aatgtggactaagcaggtaacaga |
324 |
Q |
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| T |
481417 |
aatgtggactaagcaggtaacaga |
481394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 27489078 - 27489142
Alignment:
| Q |
99 |
tatattgctcagaaactatatcaaggaaatcaaaaatagaaaagctatggtgacattcatttatt |
163 |
Q |
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| T |
27489078 |
tataatgctcaaaagctatatcaaggaaagcaaaaatagaaatgccaatgtgacattcatttatt |
27489142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 9944444 - 9944483
Alignment:
| Q |
38 |
aataattaagaacttattatacatatacaaaaatagtaaa |
77 |
Q |
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| T |
9944444 |
aataatgaagaacttattatacatatacaaaaatattaaa |
9944483 |
T |
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