View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_32 (Length: 340)
Name: NF1758_low_32
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 27732986 - 27733066
Alignment:
| Q |
173 |
ctccaattaatagtcaacagcttatcttctgagttaattttcacaggaggaagccttggataatcttccttctgcttctcc |
253 |
Q |
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| T |
27732986 |
ctccaattaatagtcaacggcttatcttctgacttaattttcacaggaggaagccttggatactcttccttctgcttctcc |
27733066 |
T |
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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 27733094 - 27733179
Alignment:
| Q |
255 |
atgttaatcggtacagaactgccttgcaacttcccaaagtaaaaatctctcccctcttcatccaccgtctcttttatataagccct |
340 |
Q |
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| T |
27733094 |
atgttattctgttcagaacttccttgcaacttccccaagtaaaaagctctccccacttcatccacctgctcttttatataagccct |
27733179 |
T |
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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 27733702 - 27733627
Alignment:
| Q |
22 |
tgacggtggaagcaaggctagtaatacttcgaatg-atcaatatctcagcaataaaaaactcaaatgagtgaagcc |
96 |
Q |
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| T |
27733702 |
tgacggtgcaagcaaggctagtaatacttcgaaggcctcaatatcccagcaatcgaaaactcaaatgagtgaagcc |
27733627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 27733586 - 27733513
Alignment:
| Q |
59 |
caatatctcagcaataaaaaactcaaatgagtgaagccattggcacagctaacagtaatgtaaaaactgaggag |
132 |
Q |
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| T |
27733586 |
caatatcacagcaatcgaaagctcaaactagtgaagcctttgacgcagccaacagtaatgtaaaaactgcggag |
27733513 |
T |
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