View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_33 (Length: 333)
Name: NF1758_low_33
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 43530577 - 43530273
Alignment:
| Q |
19 |
ctccttccacaagccacctccaacaacaccaccccaaaactatacacatcgctcgccgaagtaggcgctgcaaccgtcgctatctccggcgccaaatacc |
118 |
Q |
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| T |
43530577 |
ctccttccacaagccacctccaacaacaccaccccaaaactatacacatcgctcgccgaagtaggcgctgcaaccgtcgctatctccggcgccaaatacc |
43530478 |
T |
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| Q |
119 |
ctaaagtccccaccacacgtgtggtattaggaacttgcccatgttggtaaagcttagccaaaccaaaatctcccaatcttcctctcatatcaccatccaa |
218 |
Q |
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| T |
43530477 |
ctaaagtccccaccacacgtgtggtattaggaacttgcccatgttggtaaagcttagccaaaccaaaatctcccaatcttcctctcatatcaccatccaa |
43530378 |
T |
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| Q |
219 |
caaaatgttactagatttaatatccctatgaataacaacctggtcccaaccatgatgaaggtagctaagcccttctgccacatcaacaagaatcctacgc |
318 |
Q |
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| T |
43530377 |
caaaatgttactagatttaatatccctatgaataacaacctggtcccaaccatgatgaaggtagctaagcccttctgccacatcaacaagaatcctacgc |
43530278 |
T |
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| Q |
319 |
ctttg |
323 |
Q |
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||||| |
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| T |
43530277 |
ctttg |
43530273 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 51820949 - 51820988
Alignment:
| Q |
212 |
catccaacaaaatgttactagatttaatatccctatgaat |
251 |
Q |
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| T |
51820949 |
catctaacaaaatgttactagatttaacatccctatgaat |
51820988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 22912719 - 22912807
Alignment:
| Q |
178 |
aaaccaaaatctcccaatcttcctctcatatcaccatccaacaaaatgttactagatttaatatccctatgaataacaacctggtccca |
266 |
Q |
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||||||||||| || ||||| || |||| |||||||| || |||| ||||||| |||||| || |||||||||||||| || ||||| |
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| T |
22912719 |
aaaccaaaatcacctaatctaccattcatttcaccatctaataaaacattactagctttaatgtctctatgaataacaacttgttccca |
22912807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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