View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_35 (Length: 309)
Name: NF1758_low_35
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 15527708 - 15527412
Alignment:
| Q |
1 |
aaaaaattgaggctccaaatattacgaggtccggcacggtaactcaccttgcgcttgctaggggcggcgcccggttaaacaattaactagatcactcatt |
100 |
Q |
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| T |
15527708 |
aaaaaattgaggctccaaatattacgaggtccggcacggtaactcaccttgcgcttgctaggggcgcgacctggttaaacagttaactagatcactcatt |
15527609 |
T |
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| Q |
101 |
ttgagatagatgaaacaacatcnnnnnnnnnnnnnnnngaaacagctaagaaaacatttcttttcttcggttgtgtaatgctggatttaatatcatttcg |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| | |
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| T |
15527608 |
ttgagatagatgaaacaacatctttttctttcttttttgaaacagctaagaaaacatttctttttctccgttgtgtaatgctggatttaatttcattcgg |
15527509 |
T |
|
| Q |
201 |
tttgcctttttactcccttaggtaggtgcttatttgaataaattctaaccagtt----gatgaaatgatgattcaacacataacaaagaggggaaaa |
293 |
Q |
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| T |
15527508 |
tttgcctttttactcccttaggtagatgcttatttgaataaattctaaccagttgatcgatgaaatgacgattcaacacataacaaagaggggaaaa |
15527412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 18885992 - 18885948
Alignment:
| Q |
7 |
ttgaggctccaaatattacgaggtccggcacggtaactcaccttg |
51 |
Q |
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| T |
18885992 |
ttgaggctcctaagattgcgaggtccggcaccgtaactcaccttg |
18885948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38153906 - 38153957
Alignment:
| Q |
1 |
aaaaaattgaggctccaaatattacgaggtccggcacggtaactcaccttgc |
52 |
Q |
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| T |
38153906 |
aaaaaattgaggctcctaagattacgaggcccggcaccgtagctcaccttgc |
38153957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47582366 - 47582425
Alignment:
| Q |
1 |
aaaaaattgaggctccaaatattacgaggtccggcacggtaactcaccttgcgcttgcta |
60 |
Q |
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|||||| ||||||||| || ||| | ||||||||||| ||| |||||||||||||||||| |
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| T |
47582366 |
aaaaaactgaggctcctaaaattgcaaggtccggcaccgtagctcaccttgcgcttgcta |
47582425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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