View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1758_low_39 (Length: 291)
Name: NF1758_low_39
Description: NF1758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1758_low_39 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 36289931 - 36290221
Alignment:
| Q |
1 |
gagagaatctctagacaaaccaagaatatgcatgaaagcagtcatagcatcagcaacagaagataaattagcaggtaaattctctaactcattagcatta |
100 |
Q |
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| T |
36289931 |
gagagaatctctagacaaaccaagaatatgcatgaaagcagtcatagcatcagcaacagaagataaattagcaggtaaattctctaactcatttgcatta |
36290030 |
T |
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| Q |
101 |
gaagcaagcttctcattaatcttcttgatgatctctggcaaagtttttgagataatcatagcttgaacctgaacaagcttctgagctaaaacaggaatac |
200 |
Q |
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| T |
36290031 |
gaagcaagcttctcattaatcttcttgatgatctctggcaaagtttttgagataatcatagcttgaacctgaacaagcttctgagctaaaacaggaatac |
36290130 |
T |
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| Q |
201 |
caacaatggttttgtcaatcttagaaagaagtgagtgagactcaaacagcttttcttcttccagcctagcttcttcctaggtctcctctcc |
291 |
Q |
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| T |
36290131 |
caacaatggttttgtcaatcttagaaagaagtgagtgagactcaaacagcttttcttcttccagtctagcatcttcataggtctcatctcc |
36290221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 248
Target Start/End: Original strand, 36312438 - 36312661
Alignment:
| Q |
25 |
aatatgcatgaaagcagtcatagcatcagcaacagaagataaattagcaggtaaattctctaactcattagcattagaagcaagcttctcattaatcttc |
124 |
Q |
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| T |
36312438 |
aatatgcagaaaagcagacatagcatcagccaatgaagataaattgggaggcaaaatctttaactcatgtacactattataaagcttctcattgatcttc |
36312537 |
T |
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| Q |
125 |
ttgatgatctctggcaaagtttttgagataatcatagcttgaacctgaacaagcttctgagctaaaacaggaataccaacaatggttttgtcaatcttag |
224 |
Q |
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| T |
36312538 |
ttaattatctcaggcaaagtttttgaaataatcatagcttgcacatgaacaagcttctgagccaaaacaggaataccaacaatggatttgtcaatcttag |
36312637 |
T |
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| Q |
225 |
aaagaagtgagtgagactcaaaca |
248 |
Q |
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| T |
36312638 |
aaagaagtgagtgagactcaaaca |
36312661 |
T |
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